AT3G13772.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transmembrane nine 7 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis. Overexpression of this protein in yeast alters copper and zinc homeostasis. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
transmembrane nine 7 (TMN7); INVOLVED IN: cellular copper ion homeostasis, cellular zinc ion homeostasis; LOCATED IN: integral to membrane, Golgi apparatus, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT1G55130.1); Has 1568 Blast hits to 1544 proteins in 321 species: Archae - 0; Bacteria - 1; Metazoa - 615; Fungi - 232; Plants - 456; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:4521712..4524394 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74237.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.66 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 641 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKTKGSSFR FYATLLLSFL SFSLSRAFYL PGVAPRDFQK GDPLYVKVNK LSSTKTQLPY DYYYLNYCKP PKILNNAENL GEVLRGDRIE NSVYTFQMLE 101: DQPCKVGCRV KLNADSTKNF KEKIDDEYRA NMILDNLPVA VLRQRRDGSQ STTYEHGFRV GFKGSYEGSK EEKYFIHNHL SFRVMYHRDQ ESDSARIVGF 201: EVTPNSILHE YKEWDEKNPQ LTTCNKDTKN LIQGNTVPQE VEQGKEIVFT YDVSFKESEI KWASRWDTYL LMNDDQIHWF SIINSLMIVL FLSGMVAMIM 301: MRTLYKDISN YNQLETQDEA QEETGWKLVH GDVFRPPVNS GLLCVYVGTG VQIFGMSLVT MMFALLGFLS PSNRGGLMTA MVLLWVFMGI FAGYSSSRLH 401: KMFKGNKWKR MTLKTAFMFP GILFAIFFVL NALIWGEQSS GAIPFGTMFA LFCLWFGISV PLVFVGSYLG YKKPAIEDPV KTNKIPRQVP EQPWYMKPVF 501: SILIGGILPF GAVFIELFFI LTSIWLNQFY YIFGFLFIVF LILIVTCAEI TVVLCYFQLC SEDYNWWWRA YLTAGSSAFY LFLYSIFYFF TKLEITKLVS 601: GMLYFGYMII ISYAFFVLTG TIGFYACFWF VRKIYSSVKI D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)