suba logo
AT3G13760.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: membrane; EXPRESSED IN: root, leaf; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G35610.1); Has 1382 Blast hits to 598 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 1353; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
EMBL:AP001307EMBL:CP002686EnsemblPlants:AT3G13760EnsemblPlants:AT3G13760.1entrez:820585GeneID:820585GO:GO:0008270
GO:GO:0016020GO:GO:0047134Gramene:AT3G13760.1hmmpanther:PTHR32410hmmpanther:PTHR32410:SF152HOGENOM:HOG000064693InterPro:IPR001965
InterPro:IPR004146InterPro:IPR011424KEGG:ath:AT3G13760OMA:DIIFDKCPfam:PF03107Pfam:PF07649PhylomeDB:Q9LIC4
Proteomes:UP000006548RefSeq:NP_187989.1SMART:SM00249SMR:Q9LIC4SUPFAM:SSF57889TAIR:AT3G13760UniGene:At.53298
UniProt:Q9LIC4
Coordinates (TAIR10) chr3:+:4517517..4519475
Molecular Weight (calculated) 75493.20 Da
IEP (calculated) 7.15
GRAVY (calculated) -0.41
Length 652 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIDHELLIP HLMMEEPTVK EEDIIHNQTS TKEMYDAEKP RCLLSHPADS PHNLSVGCDP KLPLGCFTCG GKTTVRRQDY LHFHCTTCDV KFHEGCQTRP
101: RRITHPYHLQ HPLTLFYRNP ETGIISNIIP YSSPYESDTS DPESNSSGEG KSELVDIIPS KSDIIFDKCT WCGKDFKGDV WFYRCLICGF CLDLSCALTL
201: PPLTIANPKS HHHSLLFLPR PLLVPCDACG LVNALEPSYA CFQCNYMIHQ NCIDLPRVIK ITRHHHRLSF TPFGPPLISL CRVCYKEVDI KYGQYSCQHE
301: DCSYVAHSKC ATHKNVWDGT ELEWETEESD ENEDIAPFKV VGEDLIKHFC HKHHLRLKKH DGFREAEKQC RACVFPIVSH QFYHCKICNY SLHEVCAGLP
401: RKLDHALHKH RLVLDPSPLH DYRNMHCSTC SRAFTGFRYK CSEKICQDRT NLNIDVSCIL VPEYFTHKSH EHPVVISTSY SDTDEILCNA CQGTCWQPHI
501: KCTKCDFAMC YTCATIPNEV HYKFDEHPLT LCHGESRKSK YWCEVCEKKL DTTKWFYTCN KCCTTVHREC LFGSTVYMQP GSRFNYVYGT VEVFRNSHNS
601: RLVCRKCFHS CTDSVYFRGY KSQQTFISYK GYEQHEMAIC SLTCLKLEML FW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)