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AT3G13750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : beta galactosidase 1
Curator
Summary (TAIR10)
beta-galactosidase, glycosyl hydrolase family 35
Computational
Description (TAIR10)
beta galactosidase 1 (BGAL1); FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 3 (TAIR:AT4G36360.1); Has 2213 Blast hits to 2119 proteins in 468 species: Archae - 15; Bacteria - 882; Metazoa - 391; Fungi - 211; Plants - 629; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G13750-MONOMERBioGrid:5918CAZy:GH35EC:3.2.1.23eggNOG:COG1874eggNOG:KOG0496EMBL:AJ270297
EMBL:AK222229EMBL:AP001307EMBL:AY093197EMBL:CP002686EnsemblPlants:AT3G13750EnsemblPlants:AT3G13750.1entrez:820584
Gene3D:2.60.120.260Gene3D:3.20.20.80GeneID:820584Genevisible:Q9SCW1GO:GO:0004565GO:GO:0005618GO:GO:0005975
GO:GO:0009505GO:GO:0009506GO:GO:0030246GO:GO:0048046Gramene:AT3G13750.1hmmpanther:PTHR23421hmmpanther:PTHR23421:SF74
HOGENOM:HOG000239919InParanoid:Q9SCW1IntAct:Q9SCW1InterPro:IPR000922InterPro:IPR001944InterPro:IPR008979InterPro:IPR013781
InterPro:IPR017853InterPro:IPR019801InterPro:IPR031330KEGG:00052+3.2.1.23KEGG:00511+3.2.1.23KEGG:00531+3.2.1.23KEGG:00600+3.2.1.23
KEGG:00604+3.2.1.23KEGG:ath:AT3G13750OMA:KYIPGINPANTHER:PTHR23421PaxDb:Q9SCW1Pfam:PF01301Pfam:PF02140
Pfam:Q9SCW1Pfscan:PS50228PhylomeDB:Q9SCW1PRIDE:Q9SCW1PRINTS:PR00742PRO:PR:Q9SCW1PROSITE:PS00435
PROSITE:PS01182PROSITE:PS50228ProteinModelPortal:Q9SCW1Proteomes:UP000006548RefSeq:NP_187988.1scanprosite:PS01182SMR:Q9SCW1
STRING:3702.AT3G13750.1SUPFAM:SSF49785SUPFAM:SSF51445TAIR:AT3G13750tair10-symbols:BGAL1TMHMM:TMhelixUniGene:At.21793
UniGene:At.67729UniProt:Q9SCW1
Coordinates (TAIR10) chr3:+:4511192..4515756
Molecular Weight (calculated) 93663.60 Da
IEP (calculated) 8.66
GRAVY (calculated) -0.28
Length 847 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSKPNAMKN VVAMAAVSAL FLLGFLVCSV SGSVSYDSRA ITINGKRRIL ISGSIHYPRS TPEMWPDLIR KAKEGGLDVI QTYVFWNGHE PSPGKYYFEG
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)