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AT3G13740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribonuclease III family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribonuclease III family protein; FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT1G55140.1); Has 1542 Blast hits to 1541 proteins in 746 species: Archae - 0; Bacteria - 1385; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1939eggNOG:ENOG410IG34EMBL:AF386979EMBL:AY072533EMBL:CP002686EnsemblPlants:AT3G13740EnsemblPlants:AT3G13740.1
entrez:820583ExpressionAtlas:Q94F12Gene3D:1.10.1520.10GeneID:820583GO:GO:0003723GO:GO:0004525GO:GO:0006396
Gramene:AT3G13740.1hmmpanther:PTHR34276IntAct:Q94F12InterPro:IPR000999OMA:IGDCIYEPfam:PF00636PhylomeDB:Q94F12
Proteomes:UP000006548RefSeq:NP_566463.1SMART:SM00535SMR:Q94F12STRING:3702.AT3G13740.1SUPFAM:SSF69065TAIR:AT3G13740
UniGene:At.19293UniProt:Q94F12
Coordinates (TAIR10) chr3:+:4504310..4505937
Molecular Weight (calculated) 27683.00 Da
IEP (calculated) 9.40
GRAVY (calculated) -0.44
Length 247 amino acids
Sequence (TAIR10)
(BLAST)
001: MVILSASSTV RAALDTQPRL PYNPNAPRKV KKIPNGNSFL PPPSPAPSPG ISISVADLLK RPSSKEITVD VDDTYMGYET WSPSPPKLEK PRSVFNPASL
101: AFIGDSIYEL YARRHFLFPP LSIEDYNDRV RAVVRCEAQY ALLNKLVDDD FLTKEERDIL RWGKNLGSAR TRTRRRAGNA VYNKASSLET LIGYLYLTNG
201: KRLEKIMEKL GFSSDSSTEI VIEETNPKPS ESSNLPNFIL NEQVVSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)