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AT3G13720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.878
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PRA1 (Prenylated rab acceptor) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PRA8; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.F4 (TAIR:AT3G13710.1); Has 408 Blast hits to 408 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 28; Plants - 309; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Protein Annotations
BioGrid:5915eggNOG:COG5130eggNOG:KOG3142EMBL:AP001307
EMBL:AY088623EMBL:BT004174EMBL:BT004952EMBL:CP002686
EnsemblPlants:AT3G13720EnsemblPlants:AT3G13720.1entrez:820581GeneID:820581
Genevisible:Q9LIC6GO:GO:0005783GO:GO:0005789GO:GO:0016021
GO:GO:0016192Gramene:AT3G13720.1hmmpanther:PTHR19317hmmpanther:PTHR19317:SF2
HOGENOM:HOG000238420InParanoid:Q9LIC6IntAct:Q9LIC6InterPro:IPR004895
KEGG:ath:AT3G13720OMA:NVEFISRPaxDb:Q9LIC6Pfam:PF03208
Pfam:Q9LIC6PhylomeDB:Q9LIC6PRIDE:Q9LIC6PRO:PR:Q9LIC6
ProteinModelPortal:Q9LIC6Proteomes:UP000006548RefSeq:NP_566461.1STRING:3702.AT3G13720.1
TAIR:AT3G13720tair10-symbols:PRA1.F3tair10-symbols:PRA8TMHMM:TMhelix
UniGene:At.23301UniGene:At.75600UniProt:Q9LIC6
Coordinates (TAIR10) chr3:-:4495202..4495768
Molecular Weight (calculated) 21117.10 Da
IEP (calculated) 9.45
GRAVY (calculated) 0.64
Length 188 amino acids
Sequence (TAIR10)
(BLAST)
001: MTNYGAIPTS SHASPLVDVE SLSRAKHRIK AGLATRRAWR VMFDFHSMGL PHGVSDAFTR IKTNLAYFRM NYAIVVLIVI FFSLIWHPTS LIVFTVLVVV
101: WIFLYFLRDE PIKLFRFQID DRTVLIVLSV LTVVLLLLTN ATFNIVGALV TGAVLVLIHS VVRKTEDLFL DEEAATTETS GLTSYPST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)