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AT3G13680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.771
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT4G17200.1); Has 1269 Blast hits to 1208 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1269; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:5910eggNOG:ENOG410JXRJeggNOG:ENOG41103R5EMBL:AP001307
EMBL:CP002686EnsemblPlants:AT3G13680EnsemblPlants:AT3G13680.1entrez:820576
GeneID:820576Genevisible:Q9LID1Gramene:AT3G13680.1hmmpanther:PTHR32133
hmmpanther:PTHR32133:SF120HOGENOM:HOG000112505InParanoid:Q9LID1InterPro:IPR001810
InterPro:IPR006527InterPro:IPR011043InterPro:IPR017451KEGG:ath:AT3G13680
OMA:ETIEICVPaxDb:Q9LID1Pfam:PF00646Pfam:PF07734
Pfam:Q9LID1Pfscan:PS50181PhylomeDB:Q9LID1PRIDE:Q9LID1
PRO:PR:Q9LID1PROSITE:PS50181ProteinModelPortal:Q9LID1Proteomes:UP000006548
RefSeq:NP_187980.1SMART:SM00256SUPFAM:0047741SUPFAM:SSF50965
SUPFAM:SSF81383TAIR:AT3G13680TIGRfam:TIGR01640TIGRFAMs:TIGR01640
UniGene:At.39370UniProt:Q9LID1
Coordinates (TAIR10) chr3:-:4477534..4478721
Molecular Weight (calculated) 45174.00 Da
IEP (calculated) 7.29
GRAVY (calculated) -0.25
Length 395 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTMGDLPGD LVEEILSRVP LTSLRAIRST CQKWNSLSKS QICGRKATAA ENKFLGFMMK DSRVCSMKFD LQGIRNDDGE LVEPSIKQVS KLDQIEVSQV
101: FHCDGLVLCI IKDNTGLLVW NPYLGQTRWI HPRNNYQIED RYALGYDNNR NHKILRIFDL YPSSNRVFGY EVYDFSSNSW KVLDVIPEWD IQSHFRGASL
201: KGNAYFPAQK KETVGGIKTI NIEDVLLCFD FTRERFGPPL PLPFHSYNAD FFVSLACVRE EQLAVLYQRW GAFETIEICV TNKIDPNTVS WSKFLITSTG
301: FPVDTFSGSF FIDEEKKVAV VFDLDRYKPT ETCRYQIVYI IGQDEYFKSV NMGVAPNIAK NSYQAYCVPL VCSSSYVPSL VQLQINKPGK RKESN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)