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AT3G13610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 0.984
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G55290.1); Has 8779 Blast hits to 8731 proteins in 1013 species: Archae - 0; Bacteria - 1145; Metazoa - 121; Fungi - 1057; Plants - 4989; Viruses - 0; Other Eukaryotes - 1467 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G13610-MONOMERBioCyc:MetaCyc:AT3G13610-MONOMEREC:1.14.11.-eggNOG:COG3491eggNOG:KOG0143EMBL:AK221576EMBL:AP002038
EMBL:BT011745EMBL:CP002686EnsemblPlants:AT3G13610EnsemblPlants:AT3G13610.1entrez:820564Gene3D:2.60.120.330GeneID:820564
Genevisible:Q9LHN8GO:GO:0009699GO:GO:0009805GO:GO:0010421GO:GO:0046872GO:GO:0051213Gramene:AT3G13610.1
gramene_pathway:2.4.1.-gramene_pathway:PWY4FS-9hmmpanther:PTHR10209hmmpanther:PTHR10209:SF96HOGENOM:HOG000276735InterPro:IPR005123InterPro:IPR026992
InterPro:IPR027443KEGG:ath:AT3G13610KO:K06892OMA:YVKYFFRPaxDb:Q9LHN8PDB:4XAEPDBsum:4XAE
Pfam:PF03171Pfam:PF14226Pfam:Q9LHN8Pfscan:PS51471PhylomeDB:Q9LHN8PRIDE:Q9LHN8PRO:PR:Q9LHN8
PROSITE:PS51471ProteinModelPortal:Q9LHN8Proteomes:UP000006548RefSeq:NP_187970.1SMR:Q9LHN8STRING:3702.AT3G13610.1SUPFAM:SSF51197
TAIR:AT3G13610UniGene:At.48654UniGene:At.68198UniProt:Q9LHN8
Coordinates (TAIR10) chr3:+:4449448..4450616
Molecular Weight (calculated) 40673.50 Da
IEP (calculated) 5.06
GRAVY (calculated) -0.24
Length 361 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPTLLTTQF SNPAEVTDFV VYKGNGVKGL SETGIKALPE QYIQPLEERL INKFVNETDE AIPVIDMSNP DEDRVAEAVC DAAEKWGFFQ VINHGVPLEV
101: LDDVKAATHK FFNLPVEEKR KFTKENSLST TVRFGTSFSP LAEQALEWKD YLSLFFVSEA EAEQFWPDIC RNETLEYINK SKKMVRRLLE YLGKNLNVKE
201: LDETKESLFM GSIRVNLNYY PICPNPDLTV GVGRHSDVSS LTILLQDQIG GLHVRSLASG NWVHVPPVAG SFVINIGDAM QIMSNGLYKS VEHRVLANGY
301: NNRISVPIFV NPKPESVIGP LPEVIANGEE PIYRDVLYSD YVKYFFRKAH DGKKTVDYAK I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)