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AT3G13580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:17934214 (2008): cytosol
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein L30/L7 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, chloroplast, large ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT2G01250.1); Has 1325 Blast hits to 1323 proteins in 391 species: Archae - 211; Bacteria - 1; Metazoa - 476; Fungi - 215; Plants - 195; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).
Protein Annotations
BioGrid:5894eggNOG:COG1841eggNOG:KOG3184EMBL:AP002038EMBL:AY039900EMBL:AY056112EMBL:AY077675
EMBL:CP002686EnsemblPlants:AT3G13580EnsemblPlants:AT3G13580.1EnsemblPlants:AT3G13580.2EnsemblPlants:AT3G13580.3entrez:820560Gene3D:3.30.1390.20
GeneID:820560Genevisible:Q9LHP1GO:GO:0009507GO:GO:0016020GO:GO:0022625GO:GO:0022626Gramene:AT3G13580.1
Gramene:AT3G13580.2Gramene:AT3G13580.3hmmpanther:PTHR11524HOGENOM:HOG000170917InParanoid:Q9LHP1IntAct:Q9LHP1InterPro:IPR005998
InterPro:IPR012988InterPro:IPR016082InterPro:IPR018038KEGG:ath:AT3G13580KO:K02937ncoils:CoilOMA:TICAEVE
PaxDb:Q9LHP1Pfam:PF00327Pfam:PF08079Pfam:Q9LHP1PhylomeDB:Q9LHP1PRIDE:Q9LHP1PRO:PR:Q9LHP1
PROSITE:PS00634ProteinModelPortal:Q9LHP1Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_187967.1RefSeq:NP_974304.1RefSeq:NP_974305.1scanprosite:PS00634STRING:3702.AT3G13580.1
SUPFAM:SSF55129TAIR:AT3G13580TIGRfam:TIGR01310TIGRFAMs:TIGR01310UniGene:At.21334UniProt:Q9LHP1
Coordinates (TAIR10) chr3:+:4433809..4435109
Molecular Weight (calculated) 28434.90 Da
IEP (calculated) 10.62
GRAVY (calculated) -0.65
Length 244 amino acids
Sequence (TAIR10)
(BLAST)
001: MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA KQYSKEYQEK ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)