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AT3G13570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SC35-like splicing factor 30A
Curator
Summary (TAIR10)
encodes an SC35-like splicing factor of 30 kD that is localized to the nuclear specks.
Computational
Description (TAIR10)
SC35-like splicing factor 30A (SCL30A); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 33 (TAIR:AT1G55310.3); Has 39411 Blast hits to 22154 proteins in 1003 species: Archae - 84; Bacteria - 1991; Metazoa - 19033; Fungi - 3968; Plants - 4828; Viruses - 731; Other Eukaryotes - 8776 (source: NCBI BLink).
Protein Annotations
BioGrid:5893eggNOG:ENOG410IQX1eggNOG:ENOG4111J16EMBL:AF370268EMBL:AJ293800EMBL:AP002038EMBL:AY063026
EMBL:CP002686EnsemblPlants:AT3G13570EnsemblPlants:AT3G13570.1entrez:820559Gene3D:3.30.70.330GeneID:820559Genevisible:Q9LHP2
GO:GO:0000166GO:GO:0000398GO:GO:0003723GO:GO:0005681GO:GO:0005829GO:GO:0008380GO:GO:0016607
hmmpanther:PTHR23147hmmpanther:PTHR23147:SF6HOGENOM:HOG000276233InParanoid:Q9LHP2IntAct:Q9LHP2InterPro:IPR000504InterPro:IPR012677
iPTMnet:Q9LHP2KEGG:ath:AT3G13570KO:K12900OMA:RYEKERSPaxDb:Q9LHP2Pfam:PF00076Pfam:Q9LHP2
Pfscan:PS50102PhylomeDB:Q9LHP2PRIDE:Q9LHP2PRO:PR:Q9LHP2PROSITE:PS50102ProteinModelPortal:Q9LHP2Proteomes:UP000006548
RefSeq:NP_187966.1SMART:SM00360SMR:Q9LHP2STRING:3702.AT3G13570.1SUPFAM:SSF54928TAIR:AT3G13570tair10-symbols:At-SCL30A
tair10-symbols:SCL30AUniGene:At.23948UniProt:Q9LHP2
Coordinates (TAIR10) chr3:-:4429564..4431602
Molecular Weight (calculated) 30228.30 Da
IEP (calculated) 12.18
GRAVY (calculated) -1.58
Length 262 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGRSYTPSP PRGYGRRGRS PSPRGRFGGS RDSDLPTSLL VRNLRHDCRQ EDLRRPFEQF GPVKDIYLPR DYYTGDPRGF GFIQFMDPAD AAEAKHQMDG
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ DRRYEKERSY SRSPPHNGSR
201: VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP RQSRSPTPVP RGAQNGDRSP SQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)