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AT3G13560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 12805588
AmiGO : plasma membrane 16618929
AmiGO : plasma membrane 17317660
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
TAIR : plasma membrane 16618929
TAIR : plasma membrane 12805588
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26748395 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21109274 (2011): extracellular region
  • PMID:20843791 (2010): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): plasma membrane
  • PMID:16602701 (2006): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:16287169 (2006): extracellular region
  • PMID:14517339 (2003): plasma membrane
  • PMID:12805588 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-Glycosyl hydrolases family 17 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G01630.1); Has 2864 Blast hits to 2791 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 51; Plants - 2798; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
CAZy:CBM43CAZy:GH17eggNOG:ENOG410IF5ReggNOG:ENOG410YASFEMBL:AK317283EnsemblPlants:AT3G13560EnsemblPlants:AT3G13560.1
EnsemblPlants:AT3G13560.2EnsemblPlants:AT3G13560.3entrez:820558ExpressionAtlas:B9DGU2Gene3D:3.20.20.80GeneID:820558GO:GO:0004553
GO:GO:0005975Gramene:AT3G13560.1Gramene:AT3G13560.2Gramene:AT3G13560.3hmmpanther:PTHR32227hmmpanther:PTHR32227:SF48InterPro:IPR000490
InterPro:IPR012946InterPro:IPR013781InterPro:IPR017853KEGG:ath:AT3G13560KO:K19892OMA:PYYGYTTPaxDb:B9DGU2
Pfam:PF00332Pfam:PF07983Pfam:Q94CD8Pfscan:PS51257PhylomeDB:B9DGU2PRIDE:B9DGU2PROSITE:PS00587
ProteinModelPortal:B9DGU2RefSeq:NP_187965.1RefSeq:NP_974302.1RefSeq:NP_974303.1scanprosite:PS00587SMART:SM00768SMR:B9DGU2
STRING:3702.AT3G13560.1SUPFAM:SSF51445TAIR:AT3G13560TMHMM:TMhelixUniGene:At.8269UniProt:B9DGU2UniProt:Q94CD8
Coordinates (TAIR10) chr3:-:4425484..4427284
Molecular Weight (calculated) 54418.90 Da
IEP (calculated) 6.30
GRAVY (calculated) 0.05
Length 505 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLPRWFAEA LLLLLSILAC SNAAFIGVNI GTDLTNMPPP SDIVTLLKSQ QITHVRLYDA NSHMLKAFAN TSIEVMVGVT NEEILKIGRF PSAAAAWVNK
101: NVAAYIPSTN ITAIAVGSEV LTTIPHVAPI LASALNNIHK ALVASNLNFK VKVSSPMSMD IMPKPFPPST STFSPSWNTT VYQLLQFLKN TGSFFMLNAY
201: PYYGYTTANG IFPLDYALFK QLSPVKQIVD PNTLLHYNSM FDAMVDAAYY SMEALNFSKI PVVVTETGWP SSGGSDEAAA TVANAETFNT NLIKRVLNNS
301: GPPSQPDIPI NTYIYELYNE DKRSGPVSER NWGILFPNGT SVYPLSLSGG SSSAALNGSS MFCVAKADAD DDKLVDGLNW ACGQGRANCA AIQPGQPCYL
401: PNDVKSHASF AFNDYYQKMK SAGGTCDFDG TAITTTRDPS YRTCAYTGSL NANATNGNFP PDALGPASPL GGNANARIIF SYHLPILAPL ALTLLQLLLQ
501: HDRLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)