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AT3G13550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.775
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ubiquitin-conjugating enzyme family protein
Curator
Summary (TAIR10)
Encodes a protein similar to ubiquitin-conjugating enzyme (E2) variant proteins (UEV); lacks catalytic cysteine residue found in ubiquitin-conjugating enzyme E2. Represses photomorphogenesis and induces skotomorphogenesis in the dark.
Computational
Description (TAIR10)
FUSCA 9 (FUS9); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 29 (TAIR:AT2G16740.1); Has 10317 Blast hits to 10310 proteins in 396 species: Archae - 0; Bacteria - 0; Metazoa - 4584; Fungi - 2034; Plants - 2020; Viruses - 23; Other Eukaryotes - 1656 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5078eggNOG:KOG0417EMBL:AK229428EnsemblPlants:AT3G13550EnsemblPlants:AT3G13550.1entrez:820557ExpressionAtlas:Q0WNL1
Gene3D:3.10.110.10GeneID:820557GO:GO:0005634Gramene:AT3G13550.1hmmpanther:PTHR24068InParanoid:Q9LJD7InterPro:IPR000608
InterPro:IPR016135OMA:GIFFIDIPaxDb:Q0WNL1Pfam:PF00179Pfam:Q9LJD7Pfscan:PS50127PhylomeDB:Q0WNL1
PRIDE:Q0WNL1PRO:PR:Q9LJD7PROSITE:PS50127ProteinModelPortal:Q0WNL1RefSeq:NP_566459.2SMR:Q0WNL1STRING:3702.AT3G13550.1
SUPFAM:SSF54495TAIR:AT3G13550tair10-symbols:CIN4tair10-symbols:COP10tair10-symbols:EMB144tair10-symbols:FUS9UniGene:At.39400
UniProt:Q0WNL1UniProt:Q9LJD7
Coordinates (TAIR10) chr3:-:4423569..4424797
Molecular Weight (calculated) 20131.30 Da
IEP (calculated) 9.30
GRAVY (calculated) -0.18
Length 182 amino acids
Sequence (TAIR10)
(BLAST)
001: MMTPGGSGRL RPLPTAMYAG YSGTASSWVA KTSVSASGKR IQREMAELNI DPPPDCSAGP KGDNLYHWIA TIIGPSGTPY EGGIFFLDII FPSDYPFKPP
101: KLVFKTRIYH CNVDTAGDLS VNILRDSWSP ALTITKVLQA IRSIFLKPEP YSPALPVIAR LYLTDREKHD EVAKEWTLRF AK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)