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AT3G13540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : myb domain protein 5
Curator
Summary (TAIR10)
Encodes a member of the MYB family of transcriptional regulators. MYB5 act as a negative regulator of trichome branching and play a role in the correct formation of the seed coat and possibly the formation the underlying endosperm layers. Loss of function mutations have defects in seed coat mucilage and columella cells as well as trichome defects (smaller and reduced number of branches).
Computational
Description (TAIR10)
myb domain protein 5 (MYB5); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 17 (TAIR:AT3G61250.1); Has 8972 Blast hits to 8275 proteins in 512 species: Archae - 0; Bacteria - 0; Metazoa - 834; Fungi - 461; Plants - 5987; Viruses - 3; Other Eukaryotes - 1687 (source: NCBI BLink).
Protein Annotations
BioGrid:5890eggNOG:COG5147eggNOG:KOG0048EMBL:AP000603
EMBL:AY519587EMBL:CP002686EMBL:U26935EMBL:X90380
EnsemblPlants:AT3G13540EnsemblPlants:AT3G13540.1entrez:820556Gene3D:1.10.10.60
GeneID:820556Genevisible:Q38850GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0010090GO:GO:0010214
GO:GO:0010468GO:GO:0048354Gramene:AT3G13540.1hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF455HOGENOM:HOG000237600InParanoid:Q38850IntAct:Q38850
InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT3G13540
KO:K09422OMA:QTHKPLDPaxDb:Q38850Pfam:PF00249
Pfam:Q38850Pfscan:PS51294PhylomeDB:Q38850PIR:S68688
PRIDE:Q38850PRO:PR:Q38850PROSITE:PS51294ProteinModelPortal:Q38850
Proteomes:UP000006548RefSeq:NP_187963.1SMART:SM00717SMR:Q38850
STRING:3702.AT3G13540.1SUPFAM:SSF46689TAIR:AT3G13540tair10-symbols:ATMYB5
tair10-symbols:MYB5UniGene:At.39401UniProt:Q38850
Coordinates (TAIR10) chr3:+:4420239..4421443
Molecular Weight (calculated) 27795.00 Da
IEP (calculated) 8.29
GRAVY (calculated) -0.70
Length 249 amino acids
Sequence (TAIR10)
(BLAST)
001: MMSCGGKKPV SKKTTPCCTK MGMKRGPWTV EEDEILVSFI KKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG ITSDEEDLIL RLHRLLGNRW
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)