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AT3G13490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.500
mitochondrion 0.500
ASURE: mitochondrion,plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Lysyl-tRNA synthetase, class II
Curator
Summary (TAIR10)
Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype.
Computational
Description (TAIR10)
OVULE ABORTION 5 (OVA5); FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding, nucleic acid binding, lysine-tRNA ligase activity; INVOLVED IN: tRNA aminoacylation for protein translation, ovule development; LOCATED IN: mitochondrion, chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Lysyl-tRNA synthetase, class II (InterPro:IPR002313); BEST Arabidopsis thaliana protein match is: lysyl-tRNA synthetase 1 (TAIR:AT3G11710.1); Has 27489 Blast hits to 22097 proteins in 2943 species: Archae - 404; Bacteria - 18954; Metazoa - 615; Fungi - 809; Plants - 266; Viruses - 0; Other Eukaryotes - 6441 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G13490-MONOMEREC:6.1.1.6eggNOG:COG1190eggNOG:KOG1885EMBL:AP000603EMBL:BT002317EMBL:CP002686
EnsemblPlants:AT3G13490EnsemblPlants:AT3G13490.1entrez:820551Gene3D:2.40.50.140GeneID:820551Genevisible:Q9LJE2GO:GO:0003677
GO:GO:0004824GO:GO:0005524GO:GO:0005739GO:GO:0006430GO:GO:0009507GO:GO:0046872GO:GO:0048481
Gramene:AT3G13490.1gramene_pathway:6.1.1.6gramene_pathway:TRNA-CHARGING-PWYHAMAP:MF_00252hmmpanther:PTHR22594hmmpanther:PTHR22594:SF20HOGENOM:HOG000236578
InParanoid:Q9LJE2IntAct:Q9LJE2InterPro:IPR002313InterPro:IPR004364InterPro:IPR004365InterPro:IPR006195InterPro:IPR012340
InterPro:IPR018149InterPro:IPR018150KEGG:ath:AT3G13490KO:K04567ncoils:CoilOMA:YARVTMTPANTHER:PTHR22594
PaxDb:Q9LJE2Pfam:PF00152Pfam:PF01336Pfscan:PS50862PhylomeDB:Q9LJE2PRIDE:Q9LJE2PRINTS:PR00982
PRO:PR:Q9LJE2PROSITE:PS50862ProteinModelPortal:Q9LJE2Proteomes:UP000006548RefSeq:NP_187958.1SMR:Q9LJE2STRING:3702.AT3G13490.1
SUPFAM:SSF50249SUPFAM:SSF55681TAIR:AT3G13490tair10-symbols:ATKRS-2tair10-symbols:OVA5TIGRfam:TIGR00499TIGRFAMs:TIGR00499
UniGene:At.8264UniProt:Q9LJE2
Coordinates (TAIR10) chr3:-:4395984..4399302
Molecular Weight (calculated) 67591.50 Da
IEP (calculated) 5.87
GRAVY (calculated) -0.39
Length 602 amino acids
Sequence (TAIR10)
(BLAST)
001: MEALKVWSLT ATPLKQLLRL SSSSTRLATT IYGRRSYHLS PALRCASAAS SSSSSATTAE TSKPSGRNRR SASSSNSTSD REAIRSIRLK KVEELRGQGL
101: EPYAYKWEKS HSANQLQEIY KHLANGEESD NEIDCVSIAG RVVARRAFGK LAFLTLRDDS GTIQLYCEKE RLSDDQFEQL KQFIDIGDIL GASGSMKRTE
201: KGELSICVNS FSILTKSLLP LPDKYHGLTD IDKRYRQRYV DMIANPEVAD VFRRRAKIVS EIRKTVESFG YLEVETPVLQ GAAGGAEARP FVTFHNSLGR
301: DLYLRIATEL HLKRMLVGGF EKVYEIGRIF RNEGISTRHN PEFTTIEMYE AYSDYHSMMD MAELIVTQCS MAVNGKLTID YQGTEICLER PWRRETMHNL
401: VKEITGINFS ELGEDLGNAK DTVLLALQDV LEPKDKSGIR ACSSLGHLLN EIFEVVVEPK LVQPTFVLDY PIEISPLAKP HRGNAGLTER FELFICGREM
501: ANAFSELTDP VDQRTRLEEQ VRQHNAKRAE AVRESPEPNA KKDDDDDESY EVTLDEDFLT ALEYGMPPAS GMGLGIDRLV MLLTNSASIR DVIAFPVLKL
601: QQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)