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AT3G13470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26987276 (2016): plastid
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23851315 (2013): plastid
  • PMID:23549413 (2013): plastid
  • PMID:22318864 (2012): plasma membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15496452 (2005): nucleus
  • PMID:14671022 (2004): mitochondrion
  • PMID:14617066 (2003): nucleus
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TCP-1/cpn60 chaperonin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, protein refolding, cellular protein metabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: chaperonin 60 beta (TAIR:AT1G55490.2); Has 34219 Blast hits to 34175 proteins in 8725 species: Archae - 803; Bacteria - 21843; Metazoa - 1743; Fungi - 1612; Plants - 836; Viruses - 2; Other Eukaryotes - 7380 (source: NCBI BLink).
Protein Annotations
BioGrid:5883eggNOG:COG0459eggNOG:KOG0356EMBL:AP000603EMBL:CP002686EnsemblPlants:AT3G13470EnsemblPlants:AT3G13470.1
entrez:820549Gene3D:1.10.560.10Gene3D:3.50.7.10GeneID:820549Genevisible:Q9LJE4GO:GO:0005524GO:GO:0005634
GO:GO:0005730GO:GO:0005739GO:GO:0009507GO:GO:0009570GO:GO:0009941GO:GO:0022626GO:GO:0042026
Gramene:AT3G13470.1HAMAP:MF_00600hmmpanther:PTHR11353hmmpanther:PTHR11353:SF8HOGENOM:HOG000076290InParanoid:Q9LJE4IntAct:Q9LJE4
InterPro:IPR001844InterPro:IPR002423InterPro:IPR018370InterPro:IPR027409InterPro:IPR027413iPTMnet:Q9LJE4KEGG:ath:AT3G13470
KO:K04077ncoils:CoilOMA:ENHLYVVPaxDb:Q9LJE4Pfam:PF00118Pfam:Q9LJE4PhylomeDB:Q9LJE4
PIR:PS0374PRIDE:Q9LJE4PRINTS:PR00298PRO:PR:Q9LJE4PROSITE:PS00296ProteinModelPortal:Q9LJE4Proteomes:UP000006548
RefSeq:NP_187956.1scanprosite:PS00296SMR:Q9LJE4STRING:3702.AT3G13470.1SUPFAM:SSF48592SUPFAM:SSF52029SUPFAM:SSF54849
TAIR:AT3G13470TIGRfam:TIGR02348TIGRFAMs:TIGR02348UniGene:At.39411UniProt:Q9LJE4
Coordinates (TAIR10) chr3:+:4389685..4392624
Molecular Weight (calculated) 63345.30 Da
IEP (calculated) 5.40
GRAVY (calculated) -0.06
Length 596 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTFTATSS LGSLLAPNAI KLSSATSISS SSFGRRHNVC VRRSRPAIVC AAKELHFNKD GTTIRKLQTG VNKLADLVGV TLGPKGRNVV LESKYGSPRI
101: VNDGVTVARE VELEDPVENI GAKLVRQAAA KTNDLAGDGT TTSVVLAQGF IAEGVKVVAA GANPVLITRG IEKTAKALVN ELKLMSKEVE DSELADVAAV
201: SAGNNHEVGS MIAEAMSKVG RKGVVTLEEG KSAENNLYVV EGMQFDRGYI SPYFVTDSEK MSVEYDNCKL LLVDKKVTNA RDLVGVLEDA IRGGYPILII
301: AEDIEQEALA TLVVNKLRGT LKIAALKAPG FGERKSQYLD DIAILTGATV IREEVGLSLD KAGKEVLGNA SKVVLTKEMT TIVGDGTTQE AVNKRVVQIR
401: NLIEQAEQDY EKEKLNERIA KLSGGVAVIQ VGAQTETELK EKKLRVEDAL NATKAAVEEG IVVGGGCTLL RLASKVDAIK DTLENDEEKV GAEIVKRALS
501: YPLKLIAKNA GVNGSVVSEK VLANDNVKFG YNAATGKYED LMAAGIIDPT KVVRCCLEHA ASVAKTFLMS DCVVVEIPEP EPVPAGNPMD NSGYGY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)