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AT3G13450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transketolase family protein
Curator
Summary (TAIR10)
branched chain alpha-keto acid dehydrogenase E1 beta
Computational
Description (TAIR10)
DARK INDUCIBLE 4 (DIN4); FUNCTIONS IN: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity, catalytic activity; INVOLVED IN: response to light stimulus, response to sucrose stimulus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: branched-chain alpha-keto acid decarboxylase E1 beta subunit (TAIR:AT1G55510.1); Has 16402 Blast hits to 16393 proteins in 2657 species: Archae - 210; Bacteria - 10668; Metazoa - 495; Fungi - 224; Plants - 385; Viruses - 0; Other Eukaryotes - 4420 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G13450-MONOMEREC:1.2.4.4eggNOG:COG0022eggNOG:KOG0525EMBL:AF145452EMBL:AK229269EMBL:AP000603
EMBL:BT024889EMBL:CP002686EnsemblPlants:AT3G13450EnsemblPlants:AT3G13450.1entrez:820547Gene3D:3.40.50.920Gene3D:3.40.50.970
GeneID:820547Genevisible:Q9LDY2GO:GO:0003863GO:GO:0005759GO:GO:0009646GO:GO:0009744GO:GO:0043617
Gramene:AT3G13450.1hmmpanther:PTHR11624hmmpanther:PTHR11624:SF21HOGENOM:HOG000281451InterPro:IPR005475InterPro:IPR009014InterPro:IPR029061
InterPro:IPR033247InterPro:IPR033248KEGG:ath:AT3G13450KO:K00167OMA:FPAMEHLPANTHER:PTHR11624PaxDb:Q9LDY2
Pfam:PF02779Pfam:PF02780Pfam:Q9LDY2PhylomeDB:Q9LDY2PRIDE:Q9LDY2PRO:PR:Q9LDY2ProteinModelPortal:Q9LDY2
Proteomes:UP000006548Reactome:R-ATH-70895RefSeq:NP_187954.1SMART:SM00861SMR:Q9LDY2STRING:3702.AT3G13450.1SUPFAM:SSF52518
SUPFAM:SSF52922TAIR:AT3G13450tair10-symbols:DIN4UniGene:At.20074UniGene:At.24512UniProt:Q9LDY2
Coordinates (TAIR10) chr3:-:4382340..4384295
Molecular Weight (calculated) 39421.40 Da
IEP (calculated) 5.68
GRAVY (calculated) 0.01
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAALVRRFC RGSSFPVSGH GYRMLSTVEN VSESGKSMNL YSAINQALHI ALETDPRSYV FGEDVGFGGV FRCTTGLAER FGKSRVFNTP LCEQGIVGFG
101: IGLAAMGNRV IAEIQFADYI FPAFDQIVNE AAKFRYRSGN QFNCGGLTIR APYGAVGHGG HYHSQSPEAF FCHVPGIKVV IPRSPREAKG LLLSSIRDPN
201: PVVFFEPKWL YRQAVEDVPE DDYMIPLSEA EVMREGSDIT LVGWGAQLTI MEQACLDAEN EGISCELIDL KTLIPWDKEI VETSVRKTGR LLISHEAPVT
301: GGFGAEIAAT IVERCFLRLE APVSRVCGLD TPFPLVFEPF YMPTKNKILD AIRSTVNY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)