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AT3G13430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G55530.1); Has 9891 Blast hits to 9858 proteins in 281 species: Archae - 0; Bacteria - 11; Metazoa - 2611; Fungi - 953; Plants - 4922; Viruses - 39; Other Eukaryotes - 1355 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AP000603EMBL:CP002686
EnsemblPlants:AT3G13430EnsemblPlants:AT3G13430.1EnsemblPlants:AT3G13430.2EnsemblPlants:AT3G13430.3
entrez:820543Gene3D:3.30.40.10GeneID:820543GO:GO:0008270
Gramene:AT3G13430.1Gramene:AT3G13430.2Gramene:AT3G13430.3hmmpanther:PTHR22763
hmmpanther:PTHR22763:SF59InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT3G13430
KO:K11982OMA:EIGMEAKPfam:PF13639Pfam:PF14369
Pfscan:PS50089PhylomeDB:Q9LJE9PROSITE:PS50089Proteomes:UP000006548
RefSeq:NP_001030687.1RefSeq:NP_001189879.1RefSeq:NP_187951.1SMART:SM00184
SMR:Q9LJE9STRING:3702.AT3G13430.1SUPFAM:SSF57850TAIR:AT3G13430
UniGene:At.43471UniGene:At.63540UniProt:Q9LJE9
Coordinates (TAIR10) chr3:+:4367754..4368701
Molecular Weight (calculated) 35238.10 Da
IEP (calculated) 3.88
GRAVY (calculated) -0.72
Length 315 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDASETSYW CHMCSRSVIP LIQDEIIKCN FCQSGFVEEM DNNDDHQAAD SLWTPILMEM MNNNHDQHST NQEDSESILE DEDEDEDDGD DGDQNNDGEI
101: DITHQLEEIR RIRTRHSTAI VNLLQGIRAG LLIESENNED NPDNSELVVL INSFNQRIRV HQDSVDTTSV PSGSLGDYFI GPGFETLLQR LAENDLNNRY
201: GTPPATKEAV EALAMVKIED SLLQCSVCLD DFEIGMEAKE MPCKHKFHSD CLLPWLELHS SCPVCRYLLP TGDDDEPKTD AETSRNDDNN EDISNASMAS
301: NGSSPDSSSN NSSVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)