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AT3G13420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.556
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55535.1); Has 66 Blast hits to 66 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JXRHeggNOG:ENOG41103R7EMBL:BT031356EMBL:CP002686
EnsemblPlants:AT3G13420EnsemblPlants:AT3G13420.1entrez:820542GeneID:820542
GO:GO:0016021Gramene:AT3G13420.1hmmpanther:PTHR35471HOGENOM:HOG000057293
KEGG:ath:AT3G13420OMA:SLRNRIHPhylomeDB:B2GVM5Proteomes:UP000006548
RefSeq:NP_187950.2TAIR:AT3G13420TMHMM:TMhelixUniGene:At.49616
UniProt:B2GVM5
Coordinates (TAIR10) chr3:+:4364723..4365892
Molecular Weight (calculated) 27143.30 Da
IEP (calculated) 6.49
GRAVY (calculated) 0.51
Length 242 amino acids
Sequence (TAIR10)
(BLAST)
001: MLCVSLRNRI HNWLRDYVRL QSVVLILIYA QIGCALIGSL GALYNGVVLI NLAIALFGLV AIESNSQSLG RTYAVLLFCA ILLDVSWFIL FSKEIWNISS
101: DMYQVFYIFS VKLTLAMEIA GFVVRLSSSL LWFQIYRLGA SIIDSPFPRQ SDSDLRNSFL EPPLLARQRS RDPELRNSFL QAPAIAKQRS RSDEILEDSI
201: DEPASYTPLL DGGLSNITLP NATQVFLFLP ILLLSCLCTH CS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)