AT3G13330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : proteasome activating protein 200 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein that interacts with the 26S proteasome. Mutants are phenotypically indistinguishable from wild type plants under a variety of growth conditions. Protein levels increase upon exposure of seedlings to MG132, a specific, potent, reversible, and cell-permeable proteasome inhibitor. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
proteasome activating protein 200 (PA200); FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3437 (InterPro:IPR021843), Armadillo-type fold (InterPro:IPR016024); Has 512 Blast hits to 355 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 262; Plants - 57; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:4319804..4330061 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 203630.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.77 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1816 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MHLYNEWLPP PVAEETKKEK ESFARVVRCV KELHRPDDPE SVYATLKWIS VIELFVRAKS ELSVEDVSEL VEIGLQIFHS SENKLYAQVR WGNVLVRLIN 0101: KFRKKLSLKV QWRPLYDTLI HAHFSRSPGP EGWRLRQRHF MAVTSLIRSC RRFFPQGAAS EIWSEFMSLL ENPWHNSSFE GSGFVRLFLP TNPENQDFFS 0201: EKWIKNVLEL WDSIPNCQFW NSQWTSVLAR VIKNCSFIDW ESYLPMLFSR FLNMFEVPVA NGSGSYPFSV DVPRNTRFLF SNRTTTPSKS IAQSIVYFLK 0301: PGSSAHEQLE KLVNLLEQYY HPSNGGRWTY SLERFLLHLV IAFQKRLQRE QQSYCYRDPD SLPATCLGKP ERVAFVGVVL KLIDRGQYSK NEHLSETVAA 0401: ATSMLSYVEP SLVLPFVASR FHLALETTTA THQLKTAMMS VAFAGRSILQ SSMSTAKSQD LGGDVDDRMF LDLIGISLSN ALLGMDANDP PKTLATMQLI 0501: GSIFSNMAVL DDSSDDLSFM TMASFSEWLD EFLCRLIALL QHLEPNSVIN EGLSSSATSG TFLVEDGPYY YCMLEILLGR LSGSLYNQAL KKISKFVQTN 0601: ILPGAIAEVG LLCCACVHST PEEAVAQIVE PMLLAVISSL KEIPVNGYGG KGSAETLVSN KQDKQTLSPA LEAAIDYQLK VLSVAITYGG SSLLPYKGLL 0701: IEAISSAFNS SSWKVNGAGD HLLRSLLGSL ILYYPIDQYK CLSRHPAAPA LEEWISTKAS SKDEQVAHSR WHVPTQEETQ FANELLDLHL QSALDDLLSI 0801: CQSNIHSDAG DEKTHLKVTL LRIDSTLQGV LSCLPDFRPS PRHDMVEDLQ FFIAGASGSC VGSAEIREKT AITIHAACKY LLEKKSDDSI LLILIIRIMD 0901: ALGNYGSLEY DEWSNHRQAW KLESAAIVEP PANFITEFNS KGKRRPRWAL IDKAYMHNTW RSSQSSYHLF RTDGNFSPPE PLTFLVDDLL TLCLHNYETV 1001: RVLAGKSLIK LLKRWPQLLS KCVLSLTENL RKPDVQEYVV LGSCAILSSH SVLKHLTTDP KSFSSFLLGI LSSSHHESMK SQKAIIELFV KYNIHFAGLS 1101: RNILRSLESH VEGSTSGDLV SQIGSMSFDS SSLHWRYNLM ANRVLLLLVM SSRIDPSFSL KILDETAGHF LKNLKSQLPQ TRILAISALN ILLKESPHKM 1201: QGKDQPSVSS QETENANSSL DLALSQIFRE EGFFKETFES LSHIHITDTD SSSRGNHGSS SFQSMADKSI TRFYFEFSAS WPRTPSWISL LGSDIFYPSF 1301: ARIFKRLAQE CGVPVLLALK SPLEEFCNAK ERPKQCVAAE ALAGVLHSDV NGLFNEWDSW IMVQLQNVIL GQSVESIPEW AACIRYAVTG KGKQGTKIPV 1401: MRQQILDCIV APLPPTATTT VVAKRYAFLS AALIELSPPK MPVTEVKLHI VLLDELICNM SHSSAQIREA IGVILSVLCS NIRLRMSYQQ EYPTEEGKTD 1501: VDSQLKEENW FKLISAKASE AVKNIQQASI SDSLDTSTDV DMGNAQSNGD SLDDVKWMET LFHFIISSFK SGRASYLLDV IAGFLYPVMS LQETSHKDLS 1601: ILAKAAFELL KWRVFPESHL QKVIGVILSS ADDSNWRIRS STLTYLRTFM YRHTFILTHE DKQKIWKTVE KLLVDSQVEV REHAAAVLAG LMKGGDEDFA 1701: ADFRDRSYAE ANSIQKRRNR RKSSSTQSIA GVHGAVLGLV ASVLSVPYDM PSWLPEHVTL LARFAGEPTP IKSTVTKAVA EFRRTHADTW NIQKDSFTED 1801: QLEILADTSS SSSYFA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)