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AT3G13320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.943
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cation exchanger 2
Curator
Summary (TAIR10)
low affinity calcium antiporter CAX2
Computational
Description (TAIR10)
cation exchanger 2 (CAX2); CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837), Calcium/proton exchanger superfamily (InterPro:IPR004798), Calcium/proton exchanger (InterPro:IPR004713); BEST Arabidopsis thaliana protein match is: cation exchanger 5 (TAIR:AT1G55730.2); Has 3194 Blast hits to 3028 proteins in 968 species: Archae - 39; Bacteria - 1824; Metazoa - 15; Fungi - 731; Plants - 247; Viruses - 0; Other Eukaryotes - 338 (source: NCBI BLink).
Protein Annotations
BioGrid:5866eggNOG:COG0387eggNOG:KOG1397EMBL:AB024034EMBL:AF424628EMBL:AY097343EMBL:CP002686
EMBL:U57412EnsemblPlants:AT3G13320EnsemblPlants:AT3G13320.1entrez:820532GeneID:820532Genevisible:Q39254GO:GO:0005773
GO:GO:0006816GO:GO:0009705GO:GO:0015369GO:GO:0016021GO:GO:0070588Gramene:AT3G13320.1hmmpanther:PTHR31503
hmmpanther:PTHR31503:SF16HOGENOM:HOG000083011InParanoid:Q39254IntAct:Q39254InterPro:IPR004713InterPro:IPR004798InterPro:IPR004837
KEGG:ath:AT3G13320KO:K07300MINT:MINT-8069406OMA:VFDKGIAPaxDb:Q39254Pfam:PF01699Pfam:Q39254
PhylomeDB:Q39254PRIDE:Q39254PRO:PR:Q39254ProteinModelPortal:Q39254Proteomes:UP000006548RefSeq:NP_566452.1SMR:Q39254
STRING:3702.AT3G13320.1TAIR:AT3G13320tair10-symbols:atcax2tair10-symbols:CAX2TCDB:2.A.19.2.4TIGRfam:TIGR00378TIGRfam:TIGR00846
TIGRFAMs:TIGR00378TIGRFAMs:TIGR00846TMHMM:TMhelixUniGene:At.47534UniProt:Q39254
Coordinates (TAIR10) chr3:+:4315418..4317997
Molecular Weight (calculated) 48218.20 Da
IEP (calculated) 4.45
GRAVY (calculated) 0.57
Length 441 amino acids
Sequence (TAIR10)
(BLAST)
001: MSCCKVPVLI EAQVEMVSAN ELENKSLFRQ EEDATQTKEA SLMEQGSLST SFPQHTPKAP KNSVLNSIKI VIFCNKLNLL LPFGPLAILV HYMIDSKGWV
101: FLLTLVGITP LAERLGYATE QLACYTGPTV GGLLNATFGN VTELIISIFA LKNGMIRVVQ LTLLGSILSN MLLVLGCAFF CGGLVFYQKD QVFDKGIATV
201: NSGLLLMAVM GILFPAVLHY THSEVHAGSS ELALSRFSSC IMLIAYAAYL FFQLKSQSNS YSPLDEESNQ NEETSAEDED PEISKWEAII WLSILTAWVS
301: LLSGYLVDAI EGASVSWNIP IAFISTILLP IVGNAAEHAG AIMFAMKDKL DLSLGVAIGS SIQISMFAVP FCVVIGWMMG QQMDLNFQLF ETAMLFITVI
401: VVAFFLQEGS SNYFKGLMLI LCYLIVAASF FVHEDPHQDG I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)