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AT3G13230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding KH domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087); Has 734 Blast hits to 734 proteins in 323 species: Archae - 189; Bacteria - 0; Metazoa - 158; Fungi - 192; Plants - 83; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1094eggNOG:KOG3273EMBL:AB024034EMBL:AK229503
EMBL:BT015168EMBL:CP002686EnsemblPlants:AT3G13230EnsemblPlants:AT3G13230.1
entrez:820521Gene3D:3.30.1370.10GeneID:820521GO:GO:0003723
Gramene:AT3G13230.1hmmpanther:PTHR12826HOGENOM:HOG000181708InterPro:IPR004087
InterPro:IPR004088KEGG:ath:AT3G13230KO:K11884OMA:HLKLQCR
Pfam:PF00013PhylomeDB:Q9LTU6Proteomes:UP000006548RefSeq:NP_566450.1
SMART:SM00322SMR:Q9LTU6STRING:3702.AT3G13230.1SUPFAM:SSF54791
TAIR:AT3G13230UniGene:At.48653UniProt:Q9LTU6
Coordinates (TAIR10) chr3:+:4270423..4271070
Molecular Weight (calculated) 24010.40 Da
IEP (calculated) 10.35
GRAVY (calculated) -0.28
Length 215 amino acids
Sequence (TAIR10)
(BLAST)
001: MAESTQMEVE TATEGTVPLP PKPTFKPLKA HEMSDGKVQF RKIAVPPNRY SPLKKAWLDI YTPIYDQMKV DIRMNLKARK VELKTRADTP DISNLQKSAD
101: FVHAFMLGFD IPDAISLLRM DELYVESFEI KDVKTLKGEH LSRAIGRLSG KGGKTKFAIE NSTKTRIVIA DTRIHILGAF SNIKVARSSL CSLIMGSPAG
201: KVYSKLRSVS ARLNE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)