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AT3G13225.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : WW domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
WW domain-containing protein; CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); Has 4868 Blast hits to 3360 proteins in 446 species: Archae - 8; Bacteria - 476; Metazoa - 1490; Fungi - 707; Plants - 530; Viruses - 89; Other Eukaryotes - 1568 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JR1FeggNOG:ENOG4111ZVSEMBL:CP002686EnsemblPlants:AT3G13225
EnsemblPlants:AT3G13225.1entrez:820517ExpressionAtlas:F4JC81GeneID:820517
Gramene:AT3G13225.1hmmpanther:PTHR13173InterPro:IPR001202iPTMnet:F4JC81
ncoils:CoilPaxDb:F4JC81Pfam:PF00397Pfscan:PS50020
PRIDE:F4JC81PROSITE:PS01159PROSITE:PS50020ProteinModelPortal:F4JC81
Proteomes:UP000006548RefSeq:NP_187930.2scanprosite:PS01159SMART:SM00456
SMR:F4JC81STRING:3702.AT3G13225.2SUPFAM:SSF51045TAIR:AT3G13225
UniGene:At.21908UniProt:F4JC81
Coordinates (TAIR10) chr3:-:4258928..4261728
Molecular Weight (calculated) 84460.00 Da
IEP (calculated) 4.45
GRAVY (calculated) -0.82
Length 771 amino acids
Sequence (TAIR10)
(BLAST)
001: MQMADQQQTG ENSSALDSRA EVETGYTTVS NSTTLDGLNK QTVPSVQASG SVSLEHQAPT DVTSQWKMIL HEESNQYYYW NTETGETSWE LPTVLTQTTF
101: AYGTGYNESG PMVTDASTLI SSVEPSYFVP VQNSFTGTDY STFPTVELDG RNKSEDLYVK SLGTDGHQVE CRIDSVVSCQ EDLSRPGNSD HVHTYFDAGA
201: ATDLPSRLLS QIESLLEKLR SLKRSHGNFH SNEQITKYIL EVEVRHSDVK ALILDTSPLL SFWLHTEKQL KRLEDSVNDE IYQLAKSAVM DEPETNKSPP
301: KEKLVADANT ESESEDSERD GELAQSGKSL HSDESADGSG DGSPKHSPNH PAGQSDIIPS TEMLQKAGSP DVEDVDMDVD MEVEESVPVS SVQVIDASDG
401: KMFSQTEPSN LHTDVPPPPG EEWIPPPPSE SEDVPPPPPD SYSEPIPPPP DNGHVASSLS SDSLGVPYTV PQSYMHQSAD YATQYNLSYP ESNYQYTNAV
501: TLAPNTQFYG HVDGSQVSLP QSTFYYETVP GTTEVVPAAA SAGEAYYDFN GAAPLFPVIS SGESSLHHSG VGSANHHIPN NSSTAAVPSS RSNDSTEVGS
601: SATASKSTDV TSGSSLLAKG QTKVKRTKKK TVAATSTLRS NKKVSSLVDK WKAAKEELND SEEEEDDSEI LDRKRKREIE EWKSRQIASG EAKDNANFQP
701: LGGDWREKVK RKRERAEKSQ KKDPEKQQKP DLTKLSANLP SEWQAYWDES TKKVYYGNTS TSQTSWTRPT T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)