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AT3G13222.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GBF-interacting protein 1
Curator
Summary (TAIR10)
Encodes a protein that binds to G-box binding transcription factors and enhances their binding affinities to G-box in vitro. This protein localizes to the nucleus and is expressed predominantly in the root.
Computational
Description (TAIR10)
GBF-interacting protein 1 (GIP1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: Kinase-related protein of unknown function (DUF1296) (TAIR:AT1G55820.1); Has 232 Blast hits to 194 proteins in 50 species: Archae - 0; Bacteria - 13; Metazoa - 29; Fungi - 32; Plants - 145; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
EMBL:AF344829EMBL:AP000375EMBL:AP002042EMBL:AY063883EMBL:AY142588EMBL:CP002686EnsemblPlants:AT3G13222
EnsemblPlants:AT3G13222.1entrez:820513GeneID:820513GO:GO:0005634GO:GO:0043388GO:GO:0051082Gramene:AT3G13222.1
hmmpanther:PTHR12758hmmpanther:PTHR12758:SF13HOGENOM:HOG000253967IntAct:Q8VZS6InterPro:IPR009060InterPro:IPR009719iPTMnet:Q8VZS6
KEGG:ath:AT3G13222OMA:AFNHIPSPaxDb:Q8VZS6Pfam:PF06972PhylomeDB:Q8VZS6ProteinModelPortal:Q8VZS6Proteomes:UP000006548
RefSeq:NP_187929.4STRING:3702.AT3G13222.1SUPFAM:SSF46934TAIR:AT3G13222tair10-symbols:GIP1UniGene:At.27156UniProt:Q8VZS6
Coordinates (TAIR10) chr3:-:4251287..4254206
Molecular Weight (calculated) 61815.70 Da
IEP (calculated) 6.12
GRAVY (calculated) -0.65
Length 567 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRISGDGGS RVSIPADLLQ TIQNIREVTG KQHSDEDIFS VFKECFSDPH ETTQKLLYLD TFHEVRSKRE RKKENLVPNT QGRGRTGRKN FASSYTDASN
101: GRSAAFKKQS GANHIIGGSG TASSAPNNAR NDTKPSSIMA PNPISLPSGI SNQKIQDAII SPVDKVDTEE QPLSKATSSS KDVVEPDKSK ESSVSVAVSD
201: SVVENDTQYA VVETFQIPQQ SERVIKSEVA ASKCKNESLL KSDVGERPHV TFPVHIQVAK MLENGLTFGS FDSNFVREAS SDKFTIGCDD SNIESSHGTA
301: ASARKDISTF SQDKNHEISN SAAQNELTLQ PDQTVLPEEG SEGDKVKNEV LPITDTHQAA KCDAPPISYP DQYSLAAAQQ AMHLYRQQYS LNYFPYGPYF
401: PPYYMPQPYI HQYLSPNGFQ QQSYLPPGDD APAPPGAELP LTHIKPGSDI GNSPPTTIPF SYTSYAFNHI PSAATINATH KEEKKENMYT TGPLSLANLQ
501: ASPMYNLSLQ GQPIAFPTMQ AGIRGLYQQT QPILAPLSIS ARTEPIGPSH VTNQQPQAAR TNLGNNY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)