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AT3G13220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.823
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:20732973 (2010): endoplasmic reticulum
  • PMID:20732973 (2010): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ABC-2 type transporter family protein
Curator
Summary (TAIR10)
Encodes a ATP-binding cassette transporter G26 (ABCG26) involved in tapetal cell and pollen development. Required for male fertility and pollen exine formation.
Computational
Description (TAIR10)
WBC27; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G52310.1); Has 402808 Blast hits to 366123 proteins in 4145 species: Archae - 7203; Bacteria - 319822; Metazoa - 8717; Fungi - 6492; Plants - 5411; Viruses - 13; Other Eukaryotes - 55150 (source: NCBI BLink).
Protein Annotations
BioGrid:5846eggNOG:COG1131eggNOG:KOG0061EMBL:AP000375EMBL:CP002686EnsemblPlants:AT3G13220EnsemblPlants:AT3G13220.1
entrez:820512Gene3D:3.40.50.300GeneID:820512Genevisible:Q9LK50GO:GO:0005524GO:GO:0005886GO:GO:0009555
GO:GO:0010152GO:GO:0010584GO:GO:0016021GO:GO:0042626GO:GO:0055085Gramene:AT3G13220.1hmmpanther:PTHR19241
hmmpanther:PTHR19241:SF155HOGENOM:HOG000046080InParanoid:Q9LK50InterPro:IPR003439InterPro:IPR003593InterPro:IPR013525InterPro:IPR027417
KEGG:ath:AT3G13220MINT:MINT-8060469OMA:ERCRRTRPaxDb:Q9LK50Pfam:PF00005Pfam:PF01061Pfam:Q9LK50
Pfscan:PS50893PRIDE:Q9LK50PRO:PR:Q9LK50PROSITE:PS50893ProteinModelPortal:Q9LK50Proteomes:UP000006548Reactome:R-ATH-917937
RefSeq:NP_187928.2SMART:SM00382SMR:Q9LK50STRING:3702.AT3G13220.1SUPFAM:SSF52540TAIR:AT3G13220tair10-symbols:ABCG26
tair10-symbols:WBC27TMHMM:TMhelixUniGene:At.53289UniProt:Q9LK50
Coordinates (TAIR10) chr3:-:4247968..4250703
Molecular Weight (calculated) 77891.20 Da
IEP (calculated) 8.70
GRAVY (calculated) -0.01
Length 685 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIRRSTEEV EENHVMQITG SNGIVHNMEF MPQAYLRNQY SSEIDIDEEF VSTYPLEDAP LPIFLKFEDV EYKVRNSHAS SANLVKTMVS KVVTHTNPDP
101: DGYKHILKGI TGSTGPGEIL ALMGPSGSGK TTLLKIMGGR LTDNVKGKLT YNDIPYSPSV KRRIGFVTQD DVLLPQLTVE ETLAFAAFLR LPSSMSKEQK
201: YAKIEMIIKE LGLERCRRTR VGGGFVKGIS GGERKRASIA YEILVDPSLL LLDEPTSGLD STSATKLLHI LQGVAKAGRT VITTIHQPSS RMFHMFDKLL
301: LISEGHPAFY GKARESMEYF SSLRILPEIA MNPAEFLLDL ATGQVSDISL PDELLAAKTA QPDSEEVLLK YLKQRYKTDL EPKEKEENHR NRKAPEHLQI
401: AIQVKKDWTL SWWDQFLILS RRTFRERRRD YFDKLRLVQS LGVAVVLGLL WWKSKTDTEA HLRDQVGLMF YICIFWTSSS LFGAVYVFPF EKIYLVKERK
501: AEMYRLSVYY VCSTLCDMVA HVLYPTFFMI IVYFMAEFNR NIPCFLFTVL TILLIAITSQ GAGEFLGASV LSIKRAGMIA SLVLMLFLLT GGYYVQHIPK
601: FMQWLKYLSF MHYGFRLLLK VQYSADQLFE CGSKGGCRTL QSSSSFDTIN LNGGLQELWV LLAMAFGYRL CAYFCLRKKI SICHL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)