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AT3G13190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.842
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF827)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF827); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT5G55860.1); Has 29991 Blast hits to 19596 proteins in 1702 species: Archae - 469; Bacteria - 4655; Metazoa - 14295; Fungi - 2209; Plants - 1912; Viruses - 102; Other Eukaryotes - 6349 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSZHeggNOG:ENOG41108BVEMBL:AK221650EMBL:AP000375EMBL:AY136342EMBL:BT000166EMBL:CP002686
EnsemblPlants:AT3G13190EnsemblPlants:AT3G13190.1EnsemblPlants:AT3G13190.2EnsemblPlants:AT3G13190.3entrez:820509GeneID:820509Genevisible:Q9LK53
Gramene:AT3G13190.1Gramene:AT3G13190.2Gramene:AT3G13190.3hmmpanther:PTHR32054hmmpanther:PTHR32054:SF3HOGENOM:HOG000084082InParanoid:Q9LK53
iPTMnet:Q9LK53KEGG:ath:AT3G13190ncoils:CoilOMA:AKESIHRPaxDb:Q9LK53Pfam:Q9LK53PhylomeDB:Q9LK53
PRIDE:Q9LK53PRO:PR:Q9LK53ProteinModelPortal:Q9LK53Proteomes:UP000006548RefSeq:NP_001078143.1RefSeq:NP_187925.1RefSeq:NP_974301.1
TAIR:AT3G13190UniGene:At.39472UniProt:Q9LK53
Coordinates (TAIR10) chr3:+:4240751..4241804
Molecular Weight (calculated) 35641.70 Da
IEP (calculated) 5.06
GRAVY (calculated) -0.59
Length 316 amino acids
Sequence (TAIR10)
(BLAST)
001: MATFHTVRDA VKLFDAGISG GKHLNKGQEE GVLVEETNLC LWNKEVNKLK EKIKNAVKTK IEALLELEEA KKTVEQLSQE LGIKRNMIND EKDLDLSSSV
101: RVVTSELGVA KESIHRVAEE ESELCMLMES LKLELQNVEK AHSELKEIEQ RERDHQAIED LKKETKDAKT QLSLLEEELK IAVFEAQEAK DAEEHARERL
201: NVAVLESDFR SLAVVKESAA EELTETEALR ACRDETLKTL EMSEREIEDI KAATQDALKK AEMAQEATIV VDVELKRRRK AASRILAESK MCAKSTKEVL
301: KSKPRSSSKE GCLVKC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)