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AT3G13180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), NusB/RsmB/TIM44 (InterPro:IPR006027); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G55920.1); Has 10280 Blast hits to 10234 proteins in 2431 species: Archae - 377; Bacteria - 6832; Metazoa - 588; Fungi - 364; Plants - 311; Viruses - 0; Other Eukaryotes - 1808 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1221-MONOMEReggNOG:COG0144eggNOG:KOG1122EMBL:AK226254EMBL:AY072189EMBL:AY117322EMBL:CP002686
EnsemblPlants:AT3G13180EnsemblPlants:AT3G13180.1entrez:820508Gene3D:1.10.940.10Gene3D:3.40.50.150GeneID:820508GO:GO:0003723
GO:GO:0006355GO:GO:0008168Gramene:AT3G13180.1hmmpanther:PTHR22807hmmpanther:PTHR22807:SF30InterPro:IPR001678InterPro:IPR006027
InterPro:IPR023267InterPro:IPR023268InterPro:IPR029063KEGG:ath:AT3G13180KO:K03500OMA:HIGLYQLPfam:PF01029
Pfam:PF01189Pfscan:PS51686PhylomeDB:Q8VYC4PRINTS:PR02008PRINTS:PR02009PROSITE:PS51686Proteomes:UP000006548
RefSeq:NP_187924.2SMR:Q8VYC4STRING:3702.AT3G13180.1SUPFAM:SSF48013SUPFAM:SSF53335TAIR:AT3G13180UniGene:At.39475
UniProt:Q8VYC4
Coordinates (TAIR10) chr3:-:4236326..4239966
Molecular Weight (calculated) 58348.70 Da
IEP (calculated) 9.40
GRAVY (calculated) -0.23
Length 523 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQLLSFRVY LSAETQKASP GSFKRTQKTR KPFSPDRRGP VAPSRKSQNL NLEVSPHRAV SAVRLMRIEY GGAFADLLNE KGKGSGSNEM SYVERTIGFR
101: TRDLDDRDLR LVTDVVGGTI RWRRYLDHLI GSLCHNERTF RNMEPLLLQI LRIGVYEIIK RDMPPYAVVD ENVRLAKVAL RPGAGDFVNG ILRKLVSLKE
201: KDALPLPKVE GDDRAQARAL ATLHSHPVWM VRRWVKYLGL DEATKLMIWN NNDPGFSLRA NTGRDITRAD LVERLNSLKV PHELSLHLEE FVRIKTGLQT
301: VVQAGLLKEG ICSVQDESAG LIVSVVKPQP GERIMDACAA PGGKTLFMAS CLKGQGMIYA MDVNEGRLRI LGETAKSHQV DGLITTIHSD LRVFAETNEV
401: QYDKVLLDAP CSGLGVLSKR ADLRWNRKLE DMLELTKLQD ELLDSASKLV KHGGVLVYST CSIDPEENEG RVEAFLLRHP EFTIDPVTSF VPSSFVTSQG
501: FFLSNPVKHS LDGAFAARLV RAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)