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AT3G13160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At3g13160-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G55890.1); Has 40331 Blast hits to 13148 proteins in 280 species: Archae - 5; Bacteria - 51; Metazoa - 319; Fungi - 323; Plants - 38622; Viruses - 0; Other Eukaryotes - 1011 (source: NCBI BLink).
Protein Annotations
BioGrid:5839eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AP000375EMBL:AY088725EMBL:AY136471EMBL:BT002597
EMBL:CP002686EnsemblPlants:AT3G13160EnsemblPlants:AT3G13160.1entrez:820505GeneID:820505Genevisible:Q9LK57GO:GO:0005739
GO:GO:0016020Gramene:AT3G13160.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF463HOGENOM:HOG000090560InParanoid:Q9LK57IntAct:Q9LK57
InterPro:IPR002885KEGG:ath:AT3G13160OMA:MPERNCKPaxDb:Q9LK57Pfam:PF01535Pfam:PF13041Pfam:Q9LK57
Pfscan:PS51375PhylomeDB:Q9LK57PRIDE:Q9LK57PRO:PR:Q9LK57PROSITE:PS51375ProteinModelPortal:Q9LK57Proteomes:UP000006548
RefSeq:NP_566445.1SMR:Q9LK57STRING:3702.AT3G13160.1SwissPalm:Q9LK57TAIR:AT3G13160TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.1228UniGene:At.48652UniProt:Q9LK57
Coordinates (TAIR10) chr3:-:4229994..4231178
Molecular Weight (calculated) 44930.30 Da
IEP (calculated) 8.18
GRAVY (calculated) -0.32
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSLSRFLLR GNFSFSTHTN RRFFSAVTAA AATPSPPKPS LITLVNDERD PKFITEKFKK ACQAEWFRKN IAVYERTVRR LAAAKKFEWV EEILEEQNKY
101: PNMSKEGFVA RIINLYGRVG MFENAQKVFD EMPERNCKRT ALSFNALLNA CVNSKKFDLV EGIFKELPGK LSIEPDVASY NTLIKGLCGK GSFTEAVALI
201: DEIENKGLKP DHITFNILLH ESYTKGKFEE GEQIWARMVE KNVKRDIRSY NARLLGLAME NKSEEMVSLF DKLKGNELKP DVFTFTAMIK GFVSEGKLDE
301: AITWYKEIEK NGCRPLKFVF NSLLPAICKA GDLESAYELC KEIFAKRLLV DEAVLQEVVD ALVKGSKQDE AEEIVELAKT NDYLQCKLRL FPKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)