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AT3G13150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.890
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G13160.1); Has 101842 Blast hits to 26082 proteins in 1101 species: Archae - 126; Bacteria - 13439; Metazoa - 13887; Fungi - 11474; Plants - 44736; Viruses - 475; Other Eukaryotes - 17705 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AP000375EMBL:BT023440EMBL:CP002686EnsemblPlants:AT3G13150EnsemblPlants:AT3G13150.1
entrez:820503Gene3D:1.25.40.10GeneID:820503Genevisible:Q9LK58Gramene:AT3G13150.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF773
HOGENOM:HOG000115628InParanoid:Q9LK58InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT3G13150OMA:ELNCERTPaxDb:Q9LK58
Pfam:PF01535Pfam:PF13041Pfam:Q9LK58Pfscan:PS51375PhylomeDB:Q9LK58PRIDE:Q9LK58PRO:PR:Q9LK58
PROSITE:PS51375ProteinModelPortal:Q9LK58Proteomes:UP000006548RefSeq:NP_187922.1SMR:Q9LK58STRING:3702.AT3G13150.1TAIR:AT3G13150
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.8126UniProt:Q9LK58
Coordinates (TAIR10) chr3:-:4227975..4229630
Molecular Weight (calculated) 60632.90 Da
IEP (calculated) 8.08
GRAVY (calculated) -0.52
Length 551 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKVGSSLYS RLHGIFKESS IATAKSAKPR SQTKSTKFPS KLKASTASVG DGGQSSNDAK DSKNSKLTQK VEKFKRSCES ESFRQVHGLY SAFIRRLREA
101: KKFSTIDEVL QYQKKFDDIK SEDFVIRIML LYGYSGMAEH AHKLFDEMPE LNCERTVKSF NALLSAYVNS KKLDEAMKTF KELPEKLGIT PDLVTYNTMI
201: KALCRKGSMD DILSIFEELE KNGFEPDLIS FNTLLEEFYR RELFVEGDRI WDLMKSKNLS PNIRSYNSRV RGLTRNKKFT DALNLIDVMK TEGISPDVHT
301: YNALITAYRV DNNLEEVMKC YNEMKEKGLT PDTVTYCMLI PLLCKKGDLD RAVEVSEEAI KHKLLSRPNM YKPVVERLMG AGKIDEATQL VKNGKLQSYF
401: RYLPDLSAGK KKTTSSPVSS SAKTTSTPVS SSPDTSSFLL SLSLAADSSS SDSDSSSPDS SSSVSSSPDS SSSVSSSPDS YSSFSSSPDS SSSVSSSLFS
501: SSRENSSSPD YSNSVSSSLD YSGSVSSSSD YSSSVFPSAN SSSSSSGLLD D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)