suba logo
AT3G13140.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.360
cytosol 0.322
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; Has 160 Blast hits to 139 proteins in 40 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 29; Plants - 114; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2608eggNOG:KOG1603EMBL:AP000375EMBL:CP002686EMBL:DQ056591EnsemblPlants:AT3G13140EnsemblPlants:AT3G13140.1
entrez:820502GeneID:820502Gramene:AT3G13140.1hmmpanther:PTHR22814hmmpanther:PTHR22814:SF134HOGENOM:HOG000153038KEGG:ath:AT3G13140
OMA:KVSEVMHProteomes:UP000006548RefSeq:NP_187921.1STRING:3702.AT3G13140.1TAIR:AT3G13140UniGene:At.53287UniProt:Q9LK59
Coordinates (TAIR10) chr3:-:4226654..4227377
Molecular Weight (calculated) 20360.00 Da
IEP (calculated) 8.63
GRAVY (calculated) -0.64
Length 183 amino acids
Sequence (TAIR10)
(BLAST)
001: MDYTVDMSCV MKVNRGCQLC RQKVSEVMHC VYGVYSVDFT GDDNSMKLKA RVNPNVLLAV AERYGEHGKI TNLRFDGEVM TPRGGGGYYG QSGYYIPTTS
101: RGNYAYPSLY QYPPPPHVYG GNYAHPPSNP PRHSEAPRQA TNPHTTPPYY SLPAPPPRTL HSYSYVEPQY RMSSSSGSGC VIM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)