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AT3G13120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S10p/S20e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S10p/S20e family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10 subgroup (InterPro:IPR005731), Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10 (InterPro:IPR001848); Has 8443 Blast hits to 8443 proteins in 2902 species: Archae - 264; Bacteria - 5393; Metazoa - 337; Fungi - 182; Plants - 190; Viruses - 0; Other Eukaryotes - 2077 (source: NCBI BLink).
Protein Annotations
BioGrid:5834eggNOG:COG0051eggNOG:KOG0900EMBL:AF385700EMBL:AF428438EMBL:AP000375EMBL:AY081727
EMBL:CP002686EnsemblPlants:AT3G13120EnsemblPlants:AT3G13120.1EnsemblPlants:AT3G13120.2entrez:820500Gene3D:3.30.70.600GeneID:820500
Genevisible:Q9LK61GO:GO:0003723GO:GO:0003735GO:GO:0005840GO:GO:0006412GO:GO:0009507GO:GO:0009570
Gramene:AT3G13120.1Gramene:AT3G13120.2HAMAP:MF_00508hmmpanther:PTHR11700hmmpanther:PTHR11700:SF9HOGENOM:HOG000270246InterPro:IPR001848
InterPro:IPR018268InterPro:IPR027486KEGG:ath:AT3G13120KO:K02946OMA:LQVFNQSPANTHER:PTHR11700PaxDb:Q9LK61
Pfam:PF00338Pfam:Q9LK61PhylomeDB:Q9LK61PRIDE:Q9LK61PRINTS:PR00971PRO:PR:Q9LK61PROSITE:PS00361
ProteinModelPortal:Q9LK61Proteomes:UP000006548RefSeq:NP_001189875.1RefSeq:NP_187919.1scanprosite:PS00361SMART:SM01403SMR:Q9LK61
STRING:3702.AT3G13120.1SUPFAM:SSF54999TAIR:AT3G13120TIGRfam:TIGR01049TIGRFAMs:TIGR01049UniGene:At.25565UniProt:Q9LK61
Coordinates (TAIR10) chr3:-:4220310..4221526
Molecular Weight (calculated) 20838.30 Da
IEP (calculated) 9.21
GRAVY (calculated) -0.06
Length 191 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVSTVSSFL LPSFGIPSSS PSSTRLKVSL LPSSSTHGGL SSCVLTKPSV SLTKVFAVPD TLDPTPEILD EPASEVPSSS SISVDADKMA PKQKIRIKLR
101: SYWVPLIEDS CKQILDAARN TNAKTMGPVP LPTKKRIYCV LKSPHVHKDA RFHFEIRTHQ RMIDILYPTA QTIDSLMQLD LPAGVDVEVK L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)