AT3G13070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CBS domain-containing protein / transporter associated domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CBS domain-containing protein / transporter associated domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Transporter-associated domain (InterPro:IPR005170), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein / transporter associated domain-containing protein (TAIR:AT1G55930.1); Has 15808 Blast hits to 15803 proteins in 2590 species: Archae - 162; Bacteria - 11531; Metazoa - 244; Fungi - 136; Plants - 197; Viruses - 0; Other Eukaryotes - 3538 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:4191511..4195112 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73756.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.72 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 661 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMGMALELSV LGRSVIDSKT LNLKRYGQKS KLSGRFLPRA ELHCPVALSS SKHSNLSFRF RRSCEFSYRS RFMLFSSSQC HEGSQRKSDS GEKELESIKV 101: LLKRGIVIGA LVCGVFLYGC QKVLASAGVV EAGYEVFGQS VVLFKNALPK IYQVLTVLRE QGLILAALLS LSAFFSMAET SITTLWPWKV RELAEKEPEN 201: GVFRMLRSDV TRFLTTILIG TTVVNIAATA LVTEAATAIF GEAGVSAATG LMTVAILLLT EITPKSVAVH NAQEVARIVV RPVAWLSLVL YPVGRIVTYL 301: SMGILKILGL KGRSEPYVTE DELKLMLRGA ELSGAIEEEE QDMIENVLEI KDTHVREVMT PLVDVVAIDA SASLVDFHSM WVTHQYSRVP VFEQRIDNIV 401: GIAYAMDLLD YVQKGDLLES TSVGDMAHKP AYFVPDSMSV WNLLREFRIR KVHMAVVLNE YGGTIGIVTL EDVVEEIVGE IFDENDSKEE IQKKTGYIVM 501: RDEGIYDVDA NTSIDQLSEE LNMKMPEGIQ YETVSGFVCE AFGYIPKTGE SVKVVLEKES WEEDGEEEEG KQERQEPKEK NQIYRVEILA GNARKVSAVR 601: FERVNDMDQV SEASDVKSMV PKFVRKWSSE EDDGNLSNEE DQSENAVLDE HVLADNSKKQ Q |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)