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AT3G13062.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.717
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polyketide cyclase/dehydrase and lipid transport superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G55960.1); Has 332 Blast hits to 332 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111HC0eggNOG:KOG2761EMBL:AY037178EMBL:AY133605EMBL:CP002686EnsemblPlants:AT3G13062EnsemblPlants:AT3G13062.1
entrez:820493ExpressionAtlas:Q94C36Gene3D:3.30.530.20GeneID:820493GO:GO:0008289GO:GO:0016021Gramene:AT3G13062.1
hmmpanther:PTHR19308hmmpanther:PTHR19308:SF13InterPro:IPR002913InterPro:IPR023393KEGG:ath:AT3G13062Pfam:PF01852Pfscan:PS50848
PhylomeDB:Q94C36PROSITE:PS50848Proteomes:UP000006548RefSeq:NP_566443.1SMR:Q94C36STRING:3702.AT3G13062.2SUPFAM:SSF55961
TAIR:AT3G13062TMHMM:TMhelixUniGene:At.19180UniGene:At.74913UniProt:Q94C36
Coordinates (TAIR10) chr3:+:4184777..4186795
Molecular Weight (calculated) 45312.50 Da
IEP (calculated) 9.74
GRAVY (calculated) -0.32
Length 403 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSGDTLSTL AQFISSSERF FRRADGDVVF CYCWATVLAL VFILLYQFFL SRKFRFFSHA SSSSPVVSVS QSLSSQSGIS TTLVSDEDLK GLIQKLGERS
101: EDAEIWEDVI KKSNPRISYT AKCCKPTDGS PMKYLSTTVF EDCSPEVLRD FYMDNEYRKQ WDKTVVEHEQ LQVDSNSGIE IGRTIKKFPL LTPREYVLAW
201: KLWEGKDKFY CFIKECDHNM VPQQRKYVRV SYFRSGWRIR KVPGRNACEI HMVHQEDAGL NVEMAKLAFS RGIWSYVCKM ENALRKYIAT SHRPQGPTLS
301: AVSLMKKIPS ELESQTDDIT NSSGTTTSGM HTGEGAKRKK LLRKPSKKLI ANGMLLVGGA VGGAICLSRG HSALGAKVAL AYFLSKMRKR GAQLSQTSQN
401: AGI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)