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AT3G13040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb-like HTH transcriptional regulator family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: phosphate starvation response 1 (TAIR:AT4G28610.1); Has 2193 Blast hits to 2140 proteins in 145 species: Archae - 2; Bacteria - 18; Metazoa - 253; Fungi - 37; Plants - 1676; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IS24eggNOG:ENOG410YCXVEMBL:AY050889EMBL:AY096674EMBL:CP002686EnsemblPlants:AT3G13040EnsemblPlants:AT3G13040.1
EnsemblPlants:AT3G13040.2entrez:820490Gene3D:1.10.10.60GeneID:820490GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT3G13040.1Gramene:AT3G13040.2hmmpanther:PTHR31314hmmpanther:PTHR31314:SF8InterPro:IPR001005
InterPro:IPR006447InterPro:IPR009057InterPro:IPR017930InterPro:IPR025756KEGG:ath:AT3G13040OMA:ATDECNKPfam:PF00249
Pfam:PF14379Pfscan:PS51294PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_566442.1RefSeq:NP_974298.1SMR:Q949U2
STRING:3702.AT3G13040.1SUPFAM:SSF46689TAIR:AT3G13040TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.11993UniProt:Q949U2
Coordinates (TAIR10) chr3:-:4172415..4174456
Molecular Weight (calculated) 50114.70 Da
IEP (calculated) 6.65
GRAVY (calculated) -0.81
Length 449 amino acids
Sequence (TAIR10)
(BLAST)
001: MYIKAIMNRH RLLSAATDEC NKKLGQACSS SLSPVHNFLN VQPEHRKTPF IRSQSPDSPG QLWPKNSSQS TFSRSSTFCT NLYLSSSSTS ETQKHLGNSL
101: PFLPDPSSYT HSASGVESAR SPSIFTEDLG NQCDGGNSGS LLKDFLNLSG DACSDGDFHD FGCSNDSYCL SDQMELQFLS DELELAITDR AETPRLDEIY
201: ETPLASNPVT RLSPSQSCVP GAMSVDVVSS HPSPGSAANQ KSRMRWTPEL HESFVKAVIK LEGPEKATPK AVKKLMNVEG LTIYHVKSHL QKYRLAKYMP
301: EKKEEKRTDN SEEKKLALSK SEADEKKKGA IQLTEALRMQ MEVQKQLHEQ LEVQRVLQLR IEEHAKYLEK MLEEQRKTGR WISSSSQTVL SPSDDSIPDS
401: QNMSKTKASS PQPPLPAENK ASETEDDKCE SPQKRRRLEN IAESEDPKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)