AT3G13030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.986 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hAT transposon superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13020.1); Has 625 Blast hits to 607 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 623; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:4169675..4171417 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61458.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.02 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||
| Length | 544 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVMEERSCHT ANRVGDVQMG NGHKRGRSED SSSNNVSIGV ETDKQDMLSN KAQKKWVFGK CVNLSAVDAP CFKEMMTVDG GQMGLESSDC HDLNGWRLQD 101: ALEEVQDRVE KIKESWAITG CSILLDAWVD QKGRDLVTFV ADCPAGLVYL ISFDVSDFKD DVTALLSLVN GLVEEVGVRN VTQIIACSTS GWVGELGELF 201: AGHDREVFWS VSVSHCFELM LVKISKIRSF GDIFDKVNNI WLFINNNPSV LNIFRDQCHG IDITVSSSEF EFVTPYLILE SIFKAKKNLT AMFASSNWNN 301: EQCIAISNLV SDSSFWETVE SVLKCTSPLI HGLLLFSTAN NQHLGYVYDT MDSIKESIAR EFNHKPQFYK PLWDVIDDVW NKHLHNPLHA AGYFLNPTAF 401: YSTNFHLDIE VVTGLISSLI HMVEDCHVQF KISTQIDMYR LGKDCFNEAS QADQITGISP AEWWAHKASQ YPELQSLAIK ILSQTCEGAS KYKLKRSLAE 501: KLLLSEGMSN RERQHLDELV FVQYNLHLQS YKAKLSEEID VYKD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)