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AT3G12950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.979
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Trypsin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Trypsin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003); BEST Arabidopsis thaliana protein match is: Trypsin family protein (TAIR:AT5G45030.2); Has 136 Blast hits to 136 proteins in 39 species: Archae - 0; Bacteria - 52; Metazoa - 0; Fungi - 2; Plants - 79; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IN2FeggNOG:ENOG4110IB3EMBL:AB026645EMBL:BT012224EMBL:BT015744EMBL:CP002686EnsemblPlants:AT3G12950
EnsemblPlants:AT3G12950.1entrez:820480GeneID:820480Gramene:AT3G12950.1hmmpanther:PTHR31521hmmpanther:PTHR31521:SF3HOGENOM:HOG000241023
InterPro:IPR009003KEGG:ath:AT3G12950ncoils:CoilOMA:PSVEHQFPhylomeDB:Q9LDF8Proteomes:UP000006548RefSeq:NP_187901.1
SMR:Q9LDF8STRING:3702.AT3G12950.1SUPFAM:SSF50494TAIR:AT3G12950UniGene:At.43756UniProt:Q9LDF8
Coordinates (TAIR10) chr3:-:4132798..4134818
Molecular Weight (calculated) 60537.50 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.29
Length 558 amino acids
Sequence (TAIR10)
(BLAST)
001: MPQYGSTGQH CEFTAASYFS WPTSSRLSNA AEERANYFSN LQKEEDDDDE VSPEPVSTEP KGQRATTLLE LMTIRAFHSK MLRCYSLGTA IGFRIRRGVL
101: TDIPAIIVFV SRKVHKQWLS PLQCLPTALE GAGGIWCDVD VVEFSYFGEP DHQPTPKQTF TTDIVDHLQG SDPFIGSGSQ VASQETCGTL GAIVRSQTGG
201: RQVGFVTNRH VAVNLDYPSQ KMFHPLPPAL GPGVYLGAVE RATSFITDDL WFGIFAGTNP ETFVRADGAF IPFADDYDLS RVTTSVKGGV GEIGEVKAIE
301: LQSPVGSLVG KQVVKVGRSS GLTTGTVLAY ALEYNDERGV CFLTDFLVVG ENHRSPFDLE GDSGSLIVMK GEEKARPIGI IWGGTGSRGR LKLKVGECPE
401: SWTTGVDLGR LLTHLQLDLI TTDEGLKAAV QEQRAASTTG MSSMVADSSP PYVNLKKEKR SPEEKLEASL GPLQVQHIDL EERIETKGGA PSVEHQFMPT
501: FSGQCSASAW PETAREDLVA GFTNGSCDGD LCVGLRLGDD GAKRRRTQVT NERMRPAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)