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AT3G12930.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Lojap-related protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Lojap-related protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Iojap-related protein (InterPro:IPR004394); Has 4153 Blast hits to 4153 proteins in 1667 species: Archae - 0; Bacteria - 3137; Metazoa - 32; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 916 (source: NCBI BLink).
Protein Annotations
BioGrid:5812eggNOG:COG0799eggNOG:ENOG410IVY8EMBL:AB026645EMBL:AY087920EMBL:AY139986EMBL:BT002591
EMBL:CP002686EnsemblPlants:AT3G12930EnsemblPlants:AT3G12930.1entrez:820478GeneID:820478Genevisible:Q9LDY9GO:GO:0009507
GO:GO:0009570Gramene:AT3G12930.1HAMAP:MF_01477hmmpanther:PTHR21043hmmpanther:PTHR21043:SF1HOGENOM:HOG000152990InParanoid:Q9LDY9
IntAct:Q9LDY9InterPro:IPR004394iPTMnet:Q9LDY9KEGG:ath:AT3G12930OMA:YNLEDFYPANTHER:PTHR21043PaxDb:Q9LDY9
Pfam:PF02410Pfam:Q9LDY9PhylomeDB:Q9LDY9PRIDE:Q9LDY9PRO:PR:Q9LDY9ProteinModelPortal:Q9LDY9Proteomes:UP000006548
RefSeq:NP_566439.1SMR:Q9LDY9STRING:3702.AT3G12930.1SUPFAM:SSF81301TAIR:AT3G12930TIGRfam:TIGR00090TIGRFAMs:TIGR00090
UniGene:At.11983UniGene:At.67315UniProt:Q9LDY9
Coordinates (TAIR10) chr3:+:4128465..4129616
Molecular Weight (calculated) 26379.30 Da
IEP (calculated) 5.14
GRAVY (calculated) -0.16
Length 238 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSTGLTVA GALLAGDFRL PAVSSLIPRK TSSSLSCLSN RDLSSPYNCC WRLSRGKILT SLSNSRKFAV GKEAEDGFLS NVSEDTDEMF DDLFNKYGKV
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)