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AT3G12920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SBP (S-ribonuclease binding protein) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G79110.2); Has 1634 Blast hits to 1631 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 874; Fungi - 0; Plants - 566; Viruses - 36; Other Eukaryotes - 158 (source: NCBI BLink).
Protein Annotations
BioGrid:5811EC:6.3.2.-eggNOG:ENOG4111S1XeggNOG:KOG1100
EMBL:AB026645EMBL:AK118454EMBL:AY088707EMBL:BT006236
EMBL:CP002686EnsemblPlants:AT3G12920EnsemblPlants:AT3G12920.1entrez:820477
GeneID:820477Genevisible:Q9LDD1GO:GO:0004842GO:GO:0005634
GO:GO:0006952GO:GO:0008270GO:GO:0016874GO:GO:0031347
GO:GO:0043067GO:GO:0043161Gramene:AT3G12920.1hmmpanther:PTHR10044
hmmpanther:PTHR10044:SF107HOGENOM:HOG000090929InParanoid:Q9LDD1InterPro:IPR001841
InterPro:IPR017066iPTMnet:Q9LDD1KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-
KEGG:00380+6.3.2.-KEGG:ath:AT3G12920KO:K19042OMA:YNTQMRY
PaxDb:Q9LDD1Pfam:PF13920Pfam:Q9LDD1Pfscan:PS50089
PhylomeDB:Q9LDD1PIRSF:PIRSF036836PRIDE:Q9LDD1PRO:PR:Q9LDD1
PROSITE:PS50089ProteinModelPortal:Q9LDD1Proteomes:UP000006548RefSeq:NP_566438.1
SMR:Q9LDD1STRING:3702.AT3G12920.1TAIR:AT3G12920UniGene:At.39524
UniPathway:UPA00144UniProt:Q9LDD1
Coordinates (TAIR10) chr3:-:4122127..4123323
Molecular Weight (calculated) 37710.90 Da
IEP (calculated) 6.66
GRAVY (calculated) -0.49
Length 335 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)