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AT3G12890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : activator of spomin::LUC2
Curator
Summary (TAIR10)
Encodes a protein belonging to a class of CCT (CONSTANS, CONSTANS-like, TOC1) domain proteins. The protein contains a 43 amino acid-long sequence with high homology to the CCT domain but does not have any B-box or GATA-type zinc finger domains. Functions as a transcriptional activator and regulates the expression of at least a subset of sugar-inducible genes.
Computational
Description (TAIR10)
activator of spomin::LUC2 (ASML2); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT5G41380.1); Has 1405 Blast hits to 1405 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1344; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J093eggNOG:ENOG411197PEMBL:AC023838EMBL:AP000385EMBL:AY085594EMBL:AY885244EMBL:CP002686
EnsemblPlants:AT3G12890EnsemblPlants:AT3G12890.1entrez:820472GeneID:820472GO:GO:0010182GO:GO:0045893Gramene:AT3G12890.1
hmmpanther:PTHR31717hmmpanther:PTHR31717:SF9HOGENOM:HOG000152986InterPro:IPR010402KEGG:ath:AT3G12890OMA:QSWGNSEPfam:PF06203
Pfscan:PS51017PhylomeDB:Q9LDL9PROSITE:PS51017Proteomes:UP000006548RefSeq:NP_566437.1STRING:3702.AT3G12890.1TAIR:AT3G12890
tair10-symbols:ASML2UniGene:At.39532UniProt:Q9LDL9
Coordinates (TAIR10) chr3:+:4099223..4100277
Molecular Weight (calculated) 28862.00 Da
IEP (calculated) 5.74
GRAVY (calculated) -0.93
Length 251 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSLPQFYA DFTTFSCETS SQFHGSSSCP DVDSSLSSYL DDCYGSFNTS SNPESIFVPQ VFGISDVSVP EYNNYYQKMS VNNATHYFHG GDHQEYYGFS
101: PEIKPLFRPA TGEQSWGNSE GGIQAEPNTK VGRYSVEERK DRIMRYLKKK NQRNFNKTIK YVCRKTLADR RVRVRGRFAR NNDTCEEQPH MSKNHNNHSE
201: KEEDMFSGSD DYLIQMEHDD GWLHEAMSNL IPFPCEFDAP GDAHHPTNWS F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)