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AT3G12870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.974
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVBVeggNOG:ENOG410YGD0EMBL:AC023838EMBL:AP000385EMBL:BT030635EMBL:CP002686EnsemblPlants:AT3G12870
EnsemblPlants:AT3G12870.1entrez:820470GeneID:820470GO:GO:0009506GO:GO:0016021Gramene:AT3G12870.1hmmpanther:PTHR33287
hmmpanther:PTHR33287:SF1HOGENOM:HOG000240460KEGG:ath:AT3G12870ncoils:CoilOMA:ACKRSWIPhylomeDB:Q9LDH9Proteomes:UP000006548
RefSeq:NP_187893.1STRING:3702.AT3G12870.1TAIR:AT3G12870TMHMM:TMhelixUniGene:At.39536UniProt:Q9LDH9
Coordinates (TAIR10) chr3:-:4094417..4095037
Molecular Weight (calculated) 23703.00 Da
IEP (calculated) 9.56
GRAVY (calculated) -0.06
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: MASDQSTNPP IMEAKTRHPL HQIADTPTHK LLLKQWLKEE ELILSRVSHK ESQIDSVRRE ITQLYIFFFL FHSISLLLLF HASSSSSSSA SSSACKRSWI
101: PSLCALLSSL GIIWAVRYKS EVESHLEKLL EREKEDAKLL RKCVEELKKK GIEFDLLKEV DALRRAKSLR VESKPVKKWS ARDFVTLFFF SVSCLVLAMI
201: RLILCD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)