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AT3G12830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.620
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SAUR-like auxin-responsive protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G56150.1); Has 1206 Blast hits to 1201 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1205; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYXUeggNOG:ENOG410YUJ0EMBL:AB024033EMBL:AK228982EMBL:BT011607EMBL:BT012257EMBL:CP002686
EnsemblPlants:AT3G12830EnsemblPlants:AT3G12830.1entrez:820465GeneID:820465Genevisible:Q9LTV3GO:GO:0005737GO:GO:0007275
GO:GO:0009734GO:GO:0040008Gramene:AT3G12830.1hmmpanther:PTHR31374hmmpanther:PTHR31374:SF37HOGENOM:HOG000238628InParanoid:Q9LTV3
IntAct:Q9LTV3InterPro:IPR003676KEGG:ath:AT3G12830KO:K14488OMA:DSSQACHPaxDb:Q9LTV3Pfam:PF02519
Pfam:Q9LTV3PhylomeDB:Q9LTV3PRO:PR:Q9LTV3Proteomes:UP000006548RefSeq:NP_187889.1STRING:3702.AT3G12830.1TAIR:AT3G12830
UniGene:At.5682UniProt:Q9LTV3
Coordinates (TAIR10) chr3:-:4079117..4079515
Molecular Weight (calculated) 14968.10 Da
IEP (calculated) 9.58
GRAVY (calculated) -0.28
Length 132 amino acids
Sequence (TAIR10)
(BLAST)
001: MKQLIRRLSR VADSAQYSLL RSDSQRPSRR SESFLRSSVT RRSKKQTSSV PEGHVPVYVG DEMERFVVSA ELLNHPVFIG LLNRSAQEYG YEQKGVLQIP
101: CHVLVFERIM ESLRLGLPVP IDVQDLIGDG TI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)