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AT3G12780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23851315 (2013): plastid
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18433418 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16923014 (2006): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phosphoglycerate kinase 1
Curator
Summary (TAIR10)
nuclear phosphoglycerate kinase (PGK1)
Computational
Description (TAIR10)
phosphoglycerate kinase 1 (PGK1); FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: response to cadmium ion, response to cold, glycolysis, peptidyl-cysteine S-nitrosylation; LOCATED IN: in 11 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901), Phosphoglycerate kinase, conserved site (InterPro:IPR015911); BEST Arabidopsis thaliana protein match is: Phosphoglycerate kinase family protein (TAIR:AT1G56190.1); Has 10843 Blast hits to 10817 proteins in 3010 species: Archae - 254; Bacteria - 5217; Metazoa - 451; Fungi - 193; Plants - 515; Viruses - 0; Other Eukaryotes - 4213 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G12780-MONOMERBioGrid:5795EC:2.7.2.3eggNOG:COG0126eggNOG:KOG1367EMBL:AB024033EMBL:AF247558
EMBL:AF360234EMBL:AF428418EMBL:AK227225EMBL:AK316922EMBL:AY045623EMBL:AY059841EMBL:AY062953
EMBL:AY093998EMBL:AY114638EMBL:AY126991EMBL:CP002686EMBL:U37701EnsemblPlants:AT3G12780EnsemblPlants:AT3G12780.1
entrez:820461Gene3D:3.40.50.1260Gene3D:3.40.50.1270GeneID:820461Genevisible:Q9LD57GO:GO:0004618GO:GO:0005524
GO:GO:0005618GO:GO:0005634GO:GO:0005737GO:GO:0005739GO:GO:0005829GO:GO:0006096GO:GO:0009409
GO:GO:0009507GO:GO:0009570GO:GO:0009579GO:GO:0009941GO:GO:0010319GO:GO:0016020GO:GO:0019253
GO:GO:0046686GO:GO:0048046Gramene:AT3G12780.1gramene_pathway:2.7.2.3gramene_pathway:CALVIN-PWYgramene_pathway:GLYCOLYSISgramene_pathway:PWY-1042
gramene_pathway:PWYQT-4428HAMAP:MF_00145hmmpanther:PTHR11406hmmpanther:PTHR11406:SF8HOGENOM:HOG000227107InParanoid:Q9LD57IntAct:Q9LD57
InterPro:IPR001576InterPro:IPR015824InterPro:IPR015901InterPro:IPR015911iPTMnet:Q9LD57KEGG:00010+2.7.2.3KEGG:00710+2.7.2.3
KEGG:ath:AT3G12780KO:K00927OMA:AMANTFRPANTHER:PTHR11406PaxDb:Q9LD57Pfam:PF00162Pfam:Q9LD57
PhylomeDB:Q9LD57PIR:S71368PIRSF:PIRSF000724PRIDE:Q9LD57PRINTS:PR00477PRO:PR:Q9LD57PROSITE:PS00111
ProteinModelPortal:Q9LD57Proteomes:UP000006548Reactome:R-ATH-70171Reactome:R-ATH-70263RefSeq:NP_187884.1scanprosite:PS00111SMR:Q9LD57
STRING:3702.AT3G12780.1SUPFAM:SSF53748TAIR:AT3G12780tair10-symbols:PGK1UniGene:At.20378UniGene:At.53281unipathway:UPA00109
UniPathway:UPA00116UniProt:Q9LD57World-2DPAGE:0003:Q9LD57
Coordinates (TAIR10) chr3:-:4061127..4063140
Molecular Weight (calculated) 50114.60 Da
IEP (calculated) 6.11
GRAVY (calculated) 0.18
Length 481 amino acids
Sequence (TAIR10)
(BLAST)
001: MASAAASSAF SLLKSTGAVA SSAGTRARAS LLPIPSTSVS ARPLGFSATL DSRRFSLHVA SKVESVRGKG SRGVVSMAKK SVGDLTSADL KGKKVFVRAD
101: LNVPLDDNQT ITDDTRIRAA IPTIKYLIEN GAKVILSTHL GRPKGVTPKF SLAPLVPRLS ELLGIEVTKA DDCIGPEVES LVASLPEGGV LLLENVRFYK
201: EEEKNDPEFA KKLASLADLY VNDAFGTAHR AHASTEGVTK FLKPSVAGFL LQKELDYLVG AVSNPKRPFA AIVGGSKVSS KIGVIESLLE KCDILLLGGG
301: MIFTFYKAQG LSVGSSLVEE DKLELATELL AKAKAKGVSL LLPTDVVVAD KFAPDANSKI VPASGIEDGW MGLDIGPDSI KTFNEALDTT QTVIWNGPMG
401: VFEMEKFAAG TEAIANKLAE LSEKGVTTII GGGDSVAAVE KVGVAGVMSH ISTGGGASLE LLEGKVLPGV IALDEAIPVT V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)