AT3G12750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc transporter 1 precursor | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
zinc transporter 1 precursor (ZIP1); FUNCTIONS IN: zinc ion transmembrane transporter activity; INVOLVED IN: response to zinc ion, zinc ion transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: zinc transporter 5 precursor (TAIR:AT1G05300.1); Has 2022 Blast hits to 1850 proteins in 281 species: Archae - 0; Bacteria - 109; Metazoa - 565; Fungi - 630; Plants - 510; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:4051950..4053156 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37814.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.71 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.52 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 355 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSECGCFSAT TMLRICVVLI ICLHMCCASS DCTSHDDPVS QDEAEKATKL KLGSIALLLV AGGVGVSLPL IGKRIPALQP ENDIFFMVKA FAAGVILCTG 101: FVHILPDAFE RLSSPCLEDT TAGKFPFAGF VAMLSAMGTL MIDTFATGYY KRQHFSNNHG SKQVNVVVDE EEHAGHVHIH THASHGHTHG STELIRRRIV 201: SQVLEIGIVV HSVIIGISLG ASQSIDTIKP LMAALSFHQF FEGLGLGGCI SLADMKSKST VLMATFFSVT APLGIGIGLG MSSGLGYRKE SKEAIMVEGM 301: LNAASAGILI YMSLVDLLAT DFMNPRLQSN LWLHLAAYLS LVLGAGSMSL LAIWA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)