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AT3G12710.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
nucleus 0.960
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA glycosylase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT5G44680.1); Has 3673 Blast hits to 3673 proteins in 1573 species: Archae - 10; Bacteria - 3171; Metazoa - 4; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G12710-MONOMEReggNOG:COG2818eggNOG:ENOG410IFGJEMBL:AB024033EMBL:CP002686EnsemblPlants:AT3G12710EnsemblPlants:AT3G12710.1
entrez:820453Gene3D:1.10.340.30GeneID:820453GO:GO:0006284GO:GO:0008725Gramene:AT3G12710.1hmmpanther:PTHR31116
hmmpanther:PTHR31116:SF4InterPro:IPR005019InterPro:IPR011257KEGG:ath:AT3G12710KO:K01246OMA:WLITEAPPfam:PF03352
PhylomeDB:Q9LTW3Proteomes:UP000006548RefSeq:NP_566433.1SMR:Q9LTW3STRING:3702.AT3G12710.1SUPFAM:SSF48150TAIR:AT3G12710
UniGene:At.23022UniProt:Q9LTW3
Coordinates (TAIR10) chr3:-:4040572..4041828
Molecular Weight (calculated) 34918.10 Da
IEP (calculated) 10.23
GRAVY (calculated) -0.42
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKTEAISLT KRGMLPPSSC NSLMDRSESL KRDSVMGNGA AKVRGSLERK KSKSFKEGDS YSSWLITEAP GSIAAVRREQ VAAQQALRKL KIAHYGRSKS
101: TINFTSSKVV PLLNPNPNPH PQRCSFLTPT SDPIYVAYHD EEWGVPVHDD KTLFELLTLS GAQVGSDWTS TLRKRHDYRK AFMEFEAEVV AKLTEKEMNA
201: ISIEYKIEMS KVRGVVENAK KIVEIKKAFV SLEKYLWGFV NHKPISTNYK LGHKIPVKTS KSESISKDMV RRGFRFVGPT VVHSFMQAAG LTNDHLITCC
301: RHAPCTLLAT NP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)