AT3G12640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Splicing factor PWI (InterPro:IPR002483); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G24350.1); Has 3110 Blast hits to 3077 proteins in 726 species: Archae - 48; Bacteria - 800; Metazoa - 1243; Fungi - 266; Plants - 328; Viruses - 0; Other Eukaryotes - 425 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:4014455..4017675 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70102.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.65 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.75 | ||||||||||||||||||||||||||||||||||||||||
| Length | 638 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT 101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEAQSQR KRSRTDDSRN EQREAKPDVS RRLLQFAVRD ALAISRPANS 201: STESSLKRLR SVVSTSTQNS SDPDPARKIR SVARVVNPMA TVMKAVAEAA EDAKKPKSGR SVFDRISHST GSETLDQNMV LGEVSPKDEE SRNFSQGQEA 301: VQLQYTQSLA NNGVYFENMT TNDTGLNPDF SSDRGRLGSS VNVSHPSTYL GNRINNPNSL QHRLVDDSKR VKGTNYQNRL PEVATKHKTA SFSGNIDTGK 401: TVKLEEQRKI PDVGLQRYMD EGRLVSSEAT TQLSTQKILG DTIGNGNVKP AASVKEESTT NKSVPGTLST TRPLEDASSR TIFVANVHFG ATKDSLSRHF 501: NKFGEVLKAF IVTDPATGQP SGSAYIEFTR KEAAENALSL DGTSFMSRIL KIVKGSNGQN QEAASSMSWS RGGRFTRAPS YFRGGAVRGR SVVRGGGRSM 601: QWKRDSADTG NNNNVAPNNA RSLTYVRAES KSDGVAND |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)