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AT3G12610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes.
Computational
Description (TAIR10)
DNA-DAMAGE REPAIR/TOLERATION 100 (DRT100); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G20820.1); Has 34126 Blast hits to 33731 proteins in 4830 species: Archae - 159; Bacteria - 16481; Metazoa - 3906; Fungi - 1752; Plants - 1258; Viruses - 310; Other Eukaryotes - 10260 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:AC069474EMBL:AP002044EMBL:AY057652EMBL:AY086931EMBL:BT000814
EMBL:CP002686EMBL:X66482EnsemblPlants:AT3G12610EnsemblPlants:AT3G12610.1entrez:820441Gene3D:3.80.10.10GeneID:820441
Genevisible:Q00874GO:GO:0000166GO:GO:0006281GO:GO:0009507Gramene:AT3G12610.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF151
HOGENOM:HOG000066206InParanoid:Q00874InterPro:IPR001611InterPro:IPR013210InterPro:IPR032675KEGG:ath:AT3G12610OMA:SAAYVGH
PaxDb:Q00874Pfam:PF00560Pfam:PF08263Pfam:PF13516Pfam:PF13855Pfam:Q00874PhylomeDB:Q00874
PIR:A46260PRIDE:Q00874PRO:PR:Q00874ProteinModelPortal:Q00874Proteomes:UP000006548RefSeq:NP_187867.1SMR:Q00874
STRING:3702.AT3G12610.1SUPFAM:SSF52058TAIR:AT3G12610tair10-symbols:DRT100UniGene:At.24073UniGene:At.72447UniProt:Q00874
Coordinates (TAIR10) chr3:-:4006661..4007779
Molecular Weight (calculated) 39558.50 Da
IEP (calculated) 4.69
GRAVY (calculated) 0.10
Length 372 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKLLASPFS SLLAVVFISV ISVVRCCSPK DQTALNAFKS SLSEPNLGIF NTWSENTDCC KEWYGISCDP DSGRVTDISL RGESEDAIFQ KAGRSGYMSG
101: SIDPAVCDLT ALTSLVLADW KGITGEIPPC ITSLASLRIL DLAGNKITGE IPAEIGKLSK LAVLNLAENQ MSGEIPASLT SLIELKHLEL TENGITGVIP
201: ADFGSLKMLS RVLLGRNELT GSIPESISGM ERLADLDLSK NHIEGPIPEW MGNMKVLSLL NLDCNSLTGP IPGSLLSNSG LDVANLSRNA LEGTIPDVFG
301: SKTYLVSLDL SHNSLSGRIP DSLSSAKFVG HLDISHNKLC GRIPTGFPFD HLEATSFSDN QCLCGGPLTT SC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)