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AT3G12540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF547
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT2G39690.1); Has 544 Blast hits to 542 proteins in 72 species: Archae - 7; Bacteria - 26; Metazoa - 31; Fungi - 0; Plants - 446; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JU3TeggNOG:ENOG411078HEMBL:CP002686EnsemblPlants:AT3G12540
EnsemblPlants:AT3G12540.1entrez:820433GeneID:820433Gramene:AT3G12540.1
hmmpanther:PTHR23054hmmpanther:PTHR23054:SF22InParanoid:F4J9T1InterPro:IPR006869
InterPro:IPR025757KEGG:ath:AT3G12540ncoils:CoilOMA:MAFWINT
PaxDb:F4J9T1Pfam:PF04784Pfam:PF14389PRIDE:F4J9T1
ProteinModelPortal:F4J9T1Proteomes:UP000006548RefSeq:NP_187860.3STRING:3702.AT3G12540.1
TAIR:AT3G12540UniGene:At.50177UniProt:F4J9T1
Coordinates (TAIR10) chr3:+:3975246..3977247
Molecular Weight (calculated) 57595.20 Da
IEP (calculated) 7.14
GRAVY (calculated) -0.52
Length 505 amino acids
Sequence (TAIR10)
(BLAST)
001: MKMQGELEDE QALNKALRDM HRGPVMSQPR LSLLLLPPQV QELIEELATV EAEILCLEKR IQDLKLDVYS EKKENKELED SIDEGEEERM MNPKRLLQRQ
101: NHLPCDADND LIKMRSEDLK QRSKSQSYGD HHVVKDIQMN SPRTHASIGS TMEFSSRIHS STFSDGMSRT QEKNNVQETT PNGVSEDLVK CLMGIYLELN
201: RSSREREGSK TVSKLSLTHL KNASFKRKSV YDHNASNLDP YGAVMGTSLR DIGEYKNFIH ITRTSIDVSR LSDCSTSLVN LRVLKEKLSK VDLSFLNHKK
301: KMAFWINTYN ACVMNGFLEH GLPSSKEKLL TILKMATIDV GGTQLSALDI EGSILQSPCE PRESVSAGES EVRIQTRYGF RCVEPNLMFV LCRGDWSSPA
401: LRVYTAEDVV NELIKARTEY LEASIGVSGR KKIVIPRFLH KRLRDFAEDE GSLIEWICSQ LPPAQRCFQL KETAMEGLNK KSESQLKKLI EVRSHEYEFR
501: YLLAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)