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AT3G12350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.980
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 51 Blast hits to 51 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 3; Plants - 45; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG4AeggNOG:ENOG410YEK4EMBL:AC069474EMBL:AP002047EMBL:AY086584EMBL:BT001925EMBL:CP002686
EnsemblPlants:AT3G12350EnsemblPlants:AT3G12350.1entrez:820413ExpressionAtlas:Q84WW1GeneID:820413Genevisible:Q84WW1hmmpanther:PTHR22844
hmmpanther:PTHR22844:SF184HOGENOM:HOG000244092IntAct:Q84WW1InterPro:IPR001810OMA:KWEPEHFPaxDb:Q84WW1Pfam:PF12937
Pfam:Q84WW1Pfscan:PS50181PhylomeDB:Q84WW1PRO:PR:Q84WW1PROSITE:PS50181ProteinModelPortal:Q84WW1Proteomes:UP000006548
RefSeq:NP_566421.1SUPFAM:SSF81383TAIR:AT3G12350UniGene:At.27112UniProt:Q84WW1
Coordinates (TAIR10) chr3:+:3931626..3933104
Molecular Weight (calculated) 47758.90 Da
IEP (calculated) 5.75
GRAVY (calculated) -0.38
Length 422 amino acids
Sequence (TAIR10)
(BLAST)
001: MATFALPFCE IPEDLQLRIL SLLTPAEISS FACTSKRFAS LCQEDGKIWH VMCDQRWGKK TKIQKWANGQ IPYRHLYKTL KGLENLIGFW RLCGRANPAA
101: SSPPLVFFDW GSSFILGSRV LSTGDDTYEV KKTPFLLMGI SPEGRSENFL DLVGGNLRSV DDDLKELEAS NNLVSVDVNF MGNGHIMVEE NRCFTNNNRR
201: EDQRSSGDES DDLISSPNFS EMYTQLANKT SPGGDRRRQK RKEKERQASR TKWEPEHFLK VADCSPTPTR PLQGLWKGFC EGSIELYLVK YDEVGGIICR
301: KVEDLSLSRY TPPVFWTPKH TFIRSPFSAE EELLLNSRIH ISPFAEVHEN VVSGMLYMKS SCDLVLPGEP GNGIGFLRGE GRVWLYDNGT FGFGFLRDQF
401: IIDLKRVALE DGCLADEVEA CM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)