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AT3G12320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06980.4); Has 102 Blast hits to 102 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JGCHeggNOG:ENOG410Z9PAEMBL:AC069472EMBL:AC069474EMBL:AF360337EMBL:AP002047EMBL:AY051074
EMBL:CP002686EnsemblPlants:AT3G12320EnsemblPlants:AT3G12320.1entrez:820411GeneID:820411GO:GO:0006351GO:GO:0006355
GO:GO:0007623Gramene:AT3G12320.1hmmpanther:PTHR33334hmmpanther:PTHR33334:SF2HOGENOM:HOG000131657KEGG:ath:AT3G12320OMA:MFHCHDM
PhylomeDB:Q9LHH5Proteomes:UP000006548RefSeq:NP_566419.1STRING:3702.AT3G12320.1TAIR:AT3G12320UniGene:At.17428UniProt:Q9LHH5
Coordinates (TAIR10) chr3:+:3924034..3925262
Molecular Weight (calculated) 30555.60 Da
IEP (calculated) 3.97
GRAVY (calculated) -0.87
Length 269 amino acids
Sequence (TAIR10)
(BLAST)
001: MDCYAEELVV PNYQESSSET YPSTGMWGGW SMSSPEAAEK CFDYDGFNGE GMMYSQMSMR TSEEEEESKR SKAFYGASSL HDFEGIEQMD DMFLSSILED
101: VPEDDGDVHR ATSSNNSVGS SSMYGGGREV PMFHCHDMSF KEEAPFTISD LSEENMLDSN YGDELSSEEF VLQDLQRASQ KLTDETRKCF RDTFYRLARS
201: SQDKSDSVSP NSEELLMQTS RYDYGDGNRF SREEEIESET NSIDRAVANL TFNKMESNIS NFPLSERVQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)