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AT3G12290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:18431481 (2008): plastid
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Amino acid dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Amino acid dehydrogenase family protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: folic acid and derivative biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain (InterPro:IPR020631), Tetrahydrofolate dehydrogenase/cyclohydrolase (InterPro:IPR000672), NAD(P)-binding domain (InterPro:IPR016040), Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site (InterPro:IPR020867), Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain (InterPro:IPR020630); BEST Arabidopsis thaliana protein match is: Amino acid dehydrogenase family protein (TAIR:AT4G00620.1); Has 9969 Blast hits to 9964 proteins in 2781 species: Archae - 105; Bacteria - 5648; Metazoa - 394; Fungi - 308; Plants - 157; Viruses - 0; Other Eukaryotes - 3357 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G12290-MONOMERBioGrid:5743EC:1.5.1.5EC:3.5.4.9
eggNOG:COG0190eggNOG:KOG0089EMBL:AC069472EMBL:AK227542
EMBL:AP002047EMBL:AY085538EMBL:BT004612EMBL:CP002686
EnsemblPlants:AT3G12290EnsemblPlants:AT3G12290.1entrez:820409Gene3D:3.40.50.720
GeneID:820409Genevisible:Q9LHH7GO:GO:0004477GO:GO:0004488
GO:GO:0005829GO:GO:0009396GO:GO:0009507GO:GO:0009853
GO:GO:0035999Gramene:AT3G12290.1gramene_pathway:6.3.4.3gramene_pathway:PWY-2161
gramene_pathway:PWY-2201gramene_pathway:PWY-3841HAMAP:MF_01576hmmpanther:PTHR10025
hmmpanther:PTHR10025:SF33HOGENOM:HOG000218242InParanoid:Q9LHH7InterPro:IPR000672
InterPro:IPR016040InterPro:IPR020630InterPro:IPR020631InterPro:IPR020867
KEGG:00670+1.5.1.5+3.5.4.9KEGG:00720+1.5.1.5+3.5.4.9KEGG:ath:AT3G12290OMA:CLDQSTM
PaxDb:Q9LHH7Pfam:PF00763Pfam:PF02882Pfam:Q9LHH7
PhylomeDB:Q9LHH7PRIDE:Q9LHH7PRINTS:PR00085PRO:PR:Q9LHH7
PROSITE:PS00766PROSITE:PS00767ProteinModelPortal:Q9LHH7Proteomes:UP000006548
RefSeq:NP_187837.1scanprosite:PS00766scanprosite:PS00767SMR:Q9LHH7
STRING:3702.AT3G12290.1SUPFAM:SSF51735SUPFAM:SSF53223TAIR:AT3G12290
UniGene:At.47596UniGene:At.67856UniPathway:UPA00193UniProt:Q9LHH7
Coordinates (TAIR10) chr3:+:3919591..3921326
Molecular Weight (calculated) 31591.50 Da
IEP (calculated) 8.35
GRAVY (calculated) 0.04
Length 299 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSDHTAK IIDGKAIAHT IRSEIAEEVR GLSEKHGKVP GLAVVIVGSR KDSQTYVNTK RKACAEVGIK SFDVGLPEEV SEADLISKVH ELNSNPDVHG
101: ILVQLPLPKH INEEHILGAI SIDKDVDGFH PLNIGKLAMK GREPLFLPCT PKGCLELLAR SGVKIKGQRA VVVGRSNIVG LPVSLLLLKA DATVTTVHSH
201: TKDPEAIIRE ADIVIAACGQ AHMIKGNWIK PGAAVIDVGT NAVSDPSKKS GYRLVGDVDF AEASKVAGFI TPVPGGVGPM TVAMLLRNTV DGAKRVFGE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)