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AT3G12250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TGACG motif-binding factor 6
Curator
Summary (TAIR10)
basic leucine zipper transcription factor involved in the activation of SA-responsive genes.
Computational
Description (TAIR10)
TGACG motif-binding factor 6 (TGA6); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616), DNA/RNA non-specific endonuclease, active site (InterPro:IPR018524); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G06950.4); Has 938 Blast hits to 938 proteins in 84 species: Archae - 0; Bacteria - 18; Metazoa - 12; Fungi - 10; Plants - 838; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).
Protein Annotations
BioGrid:5739EMBL:AC069472EMBL:AJ320540EMBL:AP002047EMBL:CP002686EMBL:L42327EnsemblPlants:AT3G12250
EnsemblPlants:AT3G12250.1EnsemblPlants:AT3G12250.2entrez:820405ExpressionAtlas:Q39140GeneID:820405Genevisible:Q39140GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0016787GO:GO:0043565GO:GO:0046872hmmpanther:PTHR22952hmmpanther:PTHR22952:SF206
HOGENOM:HOG000116597InParanoid:Q39140IntAct:Q39140InterPro:IPR004827InterPro:IPR018524InterPro:IPR025422ncoils:Coil
Pfam:PF00170Pfam:PF14144Pfam:Q39140Pfscan:PS50217PhylomeDB:Q39140PRIDE:Q39140PRO:PR:Q39140
PROSITE:PS00036PROSITE:PS01070PROSITE:PS50217ProteinModelPortal:Q39140Proteomes:UP000006548RefSeq:NP_566415.3RefSeq:NP_974292.1
RefSeq:NP_974293.1scanprosite:PS00036scanprosite:PS01070SMART:SM00338SMR:Q39140SUPFAM:SSF57959TAIR:AT3G12250
tair10-symbols:BZIP45tair10-symbols:TGA6UniGene:At.48649UniGene:At.70207UniProt:A1A6J5UniProt:Q39140
Coordinates (TAIR10) chr3:+:3906351..3908583
Molecular Weight (calculated) 36852.50 Da
IEP (calculated) 9.03
GRAVY (calculated) -0.63
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)