AT3G12210.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : DNA binding | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: DNA repair; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583); Has 220 Blast hits to 220 proteins in 100 species: Archae - 3; Bacteria - 2; Metazoa - 90; Fungi - 77; Plants - 38; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:3894843..3895498 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 17581.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.19 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||
| Length | 155 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELEFKCSDV GVWKEALSSY DSRIESLNKP ELVSLDQFYR IKLPCLLHDR DPNPYLTTSE LSQLMKWKLS RGKWRPRLLD FVSSLDDSVV KSASEKAFKS 101: LPDISKAVKE LTVLKGVGAA TASAVLAAYA PDIAPFMSDE ERQWRWLLGT QRITL |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)